Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p22f
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12290| Best HMM Match : MFS_1 (HMM E-Value=9.6e-16) 91 7e-19
SB_51537| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 9e-12
SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07) 66 3e-11
SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068) 65 5e-11
SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 6e-10
SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26) 53 2e-07
SB_31394| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11) 30 1.3
SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042) 29 3.0
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034) 29 3.0
SB_35463| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_6146| Best HMM Match : KH_1 (HMM E-Value=1.4e-05) 27 9.1
>SB_12290| Best HMM Match : MFS_1 (HMM E-Value=9.6e-16)
Length = 432
Score = 91.1 bits (216), Expect = 7e-19
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 10/131 (7%)
Frame = +2
Query: 188 RVNISMAIVDMTDER----------KDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELAR 337
RVN+++AIV M +++ K F+W ++Q +VL SFF+GY +LQ+P LA
Sbjct: 132 RVNLNVAIVGMVNDQTISKGRLHFIKKAEFNWDSALQGLVLGSFFYGYWVLQIPGAWLAM 191
Query: 338 KFGGKPLITISVSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWV 517
+ GG + V V +L++LL P A + W LV V RI QG +PC H + S+W
Sbjct: 192 RIGGTRVFGYGVFVTSLLALLTPVATRYSVWGLVGV-RIFQGLFLGVTFPCNHAIWSKWA 250
Query: 518 PLEEKGLLTTI 550
P E+ L TI
Sbjct: 251 PPFERSTLITI 261
>SB_51537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/93 (34%), Positives = 52/93 (55%)
Frame = +2
Query: 272 VVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPTAAKIGDWKLVCVCR 451
+VL SF++GY +LQ+PAG K GGKP+ + V ++++L+ P K +C+ R
Sbjct: 2 LVLGSFYYGYAVLQIPAGWAVLKIGGKPIFGFGILVASVLALVTPPIVKQSFIVFICL-R 60
Query: 452 ILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTTI 550
I QG + + H + + W P+ E+ L TI
Sbjct: 61 IAQGLSLGLIASAHHCIWATWSPIFERASLLTI 93
>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
Length = 349
Score = 65.7 bits (153), Expect = 3e-11
Identities = 37/97 (38%), Positives = 54/97 (55%)
Frame = +2
Query: 233 KDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPTA 412
+D F W Q +VL +FF+GY++ Q+P G LA +GGK + + V A+ +LL P A
Sbjct: 95 EDGPFKWDQDTQGLVLGAFFYGYLVTQLPGGWLAGHYGGKSVFGLGVFFTAIFTLLTPIA 154
Query: 413 AKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPL 523
A+ LV V R++ GF + P + L S VPL
Sbjct: 155 ARTHVALLVAV-RLMAGFGEKVPVPWLKILTS--VPL 188
>SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068)
Length = 256
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Frame = +2
Query: 251 WSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPTAAK---I 421
W+ +VLSSFFWGY+I Q+P G L+ +G + L+ +V+ +L +L++P A
Sbjct: 68 WNKRESGLVLSSFFWGYLITQIPGGFLSDVYGAERLLLWAVTGCSLSTLVIPLVASQKVT 127
Query: 422 GDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEK 532
LV + R+ G Q YP ++ L+++ +P+ E+
Sbjct: 128 SPITLVLISRLALGVFQGIYYPSLYSLLAKSLPISER 164
>SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Frame = +2
Query: 251 WSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISL---LLPTAAKI 421
W V+S+FFWGY Q+ G L+ K+GG+ ++ + + + +L LP A +
Sbjct: 56 WDKEADGAVMSAFFWGYTPAQIVGGYLSDKYGGEVVLGYAAIIWSFCTLAVPFLPGKAFL 115
Query: 422 --GDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTTIVY 556
+V + R++ G +Q YP + +++++ +PL+E+ LLT+ V+
Sbjct: 116 FFPPIVMVILSRVVTGLSQGLHYPSLTNIIAKRIPLKERTLLTSSVF 162
>SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)
Length = 473
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/72 (41%), Positives = 45/72 (62%)
Frame = +2
Query: 260 SVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPTAAKIGDWKLV 439
+V+ VVL SF++GYV LQ+ G LA K G L ++ V +L++LL P AA+ + LV
Sbjct: 63 AVEGVVLGSFYYGYVALQLLGGWLAIKIGATRLYGAAILVASLLTLLTPLAARGSPYLLV 122
Query: 440 CVCRILQGFTQA 475
+ R+L+G A
Sbjct: 123 AL-RMLEGLVLA 133
>SB_31394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/64 (34%), Positives = 38/64 (59%)
Frame = +2
Query: 272 VVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPTAAKIGDWKLVCVCR 451
++L SF++GY++ Q+P G LA K GG L + + ++L P AA+ L+ + R
Sbjct: 2 IILGSFYYGYMVFQIPGGWLAMKLGGAKLFGFGIFSASFLTLFTPLAARCSPIALI-ILR 60
Query: 452 ILQG 463
+L+G
Sbjct: 61 VLEG 64
>SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 302 VILQVPAGELARKFGGKPLITISVSVNALISLLLPTAAK 418
++ QVP G LA++FGG+ ++ + +++ L P AA+
Sbjct: 1 MLTQVPGGMLAQRFGGRVVLGSCMLFSSIFVFLSPVAAR 39
>SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)
Length = 302
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 263 VQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNA 385
+ ++V S +F GY+ + +G L+ FG K +T+SV++ A
Sbjct: 53 IPALVQSMYFVGYLFGSLLSGTLSDAFGRKISLTVSVALQA 93
>SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)
Length = 277
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 263 VQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNA 385
+ ++V S +F GY+ +G ++ FG K +T+SV++ A
Sbjct: 144 ISALVQSMYFVGYLFGSFLSGTVSDAFGRKITLTVSVALQA 184
>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
Length = 363
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 263 VQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNA 385
+ ++V S +F GY+ +G ++ FG K +T+SV++ A
Sbjct: 147 ISALVQSMYFVGYLFGSFLSGTVSDAFGRKITLTVSVALQA 187
>SB_35463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 293 WGYVILQVPAGELARKFGGKPLITISVSVNALISLLL 403
WGY+IL V AG L F G ++ +S + + ++
Sbjct: 97 WGYIILNVAAGYLYGFFYGLVVVFVSATCGVTTAFIV 133
>SB_6146| Best HMM Match : KH_1 (HMM E-Value=1.4e-05)
Length = 148
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -2
Query: 526 FQRYPLADEMVHTRVHECLREALEDSADAHQFPITNFSGSRQEQ*DQRINRH 371
F+ A+ M+ +VHECL++ ++D +A + N S +Q Q+ ++H
Sbjct: 36 FENCMKAECMISGKVHECLKKDMDDLVNAG--GMMNVSQYPYQQAPQQFHQH 85
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,802,072
Number of Sequences: 59808
Number of extensions: 427157
Number of successful extensions: 1079
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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