Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p22f
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   9.6  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 534 PFSSRGTHWLTRWCIQGYTNACVKPWRIRQTHTSF 430
           P+ S   +W T+ C+  Y    +  W     H +F
Sbjct: 97  PWGSCNNYWNTKNCVNPYDRDSLSCWLQMTKHHNF 131


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 320 LAPEVSRSPRKMRTRPRTAHCGSSRNTRLSSHQS 219
           ++P+  R P+ +  R  +  CG  + TR  +HQS
Sbjct: 219 VSPQEER-PKGINGRRASLFCGLQKYTRSFAHQS 251


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 320 LAPEVSRSPRKMRTRPRTAHCGSSRNTRLSSHQS 219
           ++P+  R P+ +  R  +  CG  + TR  +HQS
Sbjct: 214 VSPQEER-PKGINGRRASLFCGLQKYTRSFAHQS 246


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 423 PILAAVGRSNEINALTDTEMVINGFPPNFLASSPA 319
           PI +    S  IN++T  + VIN        ++PA
Sbjct: 855 PITSLPASSTSINSITVEKDVINDVKTQITTNTPA 889


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 241 VFRLEPQCAVRGLVLIFLGLRDTSGASW 324
           VF+L    AV G  L+FL   +    SW
Sbjct: 441 VFQLLDSYAVSGFCLLFLMFFECIAISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 241 VFRLEPQCAVRGLVLIFLGLRDTSGASW 324
           VF+L    AV G  L+FL   +    SW
Sbjct: 494 VFQLLDSYAVSGFCLLFLMFFECIAISW 521


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/51 (17%), Positives = 21/51 (41%)
 Frame = +2

Query: 137 HVQTIXXXXXXXXXXXXRVNISMAIVDMTDERKDEYFDWSHSVQSVVLSSF 289
           H+Q I            R  I M ++      K + + W++ +  ++ +S+
Sbjct: 58  HIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHILWTSY 108


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/51 (17%), Positives = 21/51 (41%)
 Frame = +2

Query: 137 HVQTIXXXXXXXXXXXXRVNISMAIVDMTDERKDEYFDWSHSVQSVVLSSF 289
           H+Q I            R  I M ++      K + + W++ +  ++ +S+
Sbjct: 41  HIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHILWTSY 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,013
Number of Sequences: 438
Number of extensions: 3679
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)