Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p22f
(614 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00370.1 68417.m00051 sugar transporter family protein contai... 85 5e-17
At2g29650.2 68415.m03604 inorganic phosphate transporter, putati... 81 8e-16
At2g29650.1 68415.m03603 inorganic phosphate transporter, putati... 81 8e-16
At2g29650.3 68415.m03602 inorganic phosphate transporter, putati... 79 3e-15
At3g46980.2 68416.m05102 transporter-related low similarity to b... 75 3e-14
At3g46980.1 68416.m05101 transporter-related low similarity to b... 75 3e-14
At2g38060.1 68415.m04672 transporter-related low similarity to v... 75 3e-14
At5g20380.1 68418.m02424 transporter-related low similarity to v... 70 1e-12
At5g44370.1 68418.m05433 transporter-related similar to vesicula... 69 2e-12
At4g35300.2 68417.m05018 transporter-related low similarity to h... 34 0.065
At4g35300.1 68417.m05017 transporter-related low similarity to h... 34 0.065
At3g51490.1 68416.m05639 sugar transporter family protein simila... 31 0.80
At5g38070.1 68418.m04587 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase famil... 29 3.2
At5g57360.1 68418.m07166 F-box family protein / LOV kelch protei... 28 4.3
At3g46920.1 68416.m05092 protein kinase family protein similar t... 28 4.3
At3g14710.1 68416.m01860 F-box family protein ; similar to SKP... 28 4.3
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 28 4.3
At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,... 28 5.7
At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase famil... 28 5.7
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 27 7.5
At1g29890.1 68414.m03653 acetyltransferase-related low similarit... 27 7.5
At3g18540.1 68416.m02358 expressed protein 27 9.9
At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol sp... 27 9.9
At1g26510.1 68414.m03231 F-box family protein contains F-box dom... 27 9.9
>At4g00370.1 68417.m00051 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 541
Score = 84.6 bits (200), Expect = 5e-17
Identities = 41/123 (33%), Positives = 72/123 (58%)
Frame = +2
Query: 188 RVNISMAIVDMTDERKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITI 367
RVN+S+AI+ M+ E ++WS + ++ SSFFWGY++ Q+ G A KFGGK ++
Sbjct: 149 RVNMSIAILPMSQE-----YNWSSATVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGF 203
Query: 368 SVSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTT 547
V + +++ P AA++G + V R G + P M++++S+W+P+ E+
Sbjct: 204 GVVWWSFATIMTPIAARLG-LPFLLVVRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA 262
Query: 548 IVY 556
+VY
Sbjct: 263 LVY 265
>At2g29650.2 68415.m03604 inorganic phosphate transporter, putative
similar to brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 398
Score = 80.6 bits (190), Expect = 8e-16
Identities = 41/123 (33%), Positives = 71/123 (57%)
Frame = +2
Query: 188 RVNISMAIVDMTDERKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITI 367
RVN+S+AI+ M+ E + W+ + ++ SSFFWGY++ Q+ G A GGK ++
Sbjct: 120 RVNMSIAILPMSAE-----YGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGF 174
Query: 368 SVSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTT 547
V ++ ++L P AAK+G + V R G + P M++++S+WVP++E+
Sbjct: 175 GVIWWSIATILTPVAAKLG-LPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLA 233
Query: 548 IVY 556
+VY
Sbjct: 234 LVY 236
>At2g29650.1 68415.m03603 inorganic phosphate transporter, putative
similar to brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 512
Score = 80.6 bits (190), Expect = 8e-16
Identities = 41/123 (33%), Positives = 71/123 (57%)
Frame = +2
Query: 188 RVNISMAIVDMTDERKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITI 367
RVN+S+AI+ M+ E + W+ + ++ SSFFWGY++ Q+ G A GGK ++
Sbjct: 120 RVNMSIAILPMSAE-----YGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGF 174
Query: 368 SVSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTT 547
V ++ ++L P AAK+G + V R G + P M++++S+WVP++E+
Sbjct: 175 GVIWWSIATILTPVAAKLG-LPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLA 233
Query: 548 IVY 556
+VY
Sbjct: 234 LVY 236
>At2g29650.3 68415.m03602 inorganic phosphate transporter, putative
similar to brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 400
Score = 78.6 bits (185), Expect = 3e-15
Identities = 40/122 (32%), Positives = 70/122 (57%)
Frame = +2
Query: 191 VNISMAIVDMTDERKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITIS 370
VN+S+AI+ M+ E + W+ + ++ SSFFWGY++ Q+ G A GGK ++
Sbjct: 9 VNMSIAILPMSAE-----YGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFG 63
Query: 371 VSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTTI 550
V ++ ++L P AAK+G + V R G + P M++++S+WVP++E+ +
Sbjct: 64 VIWWSIATILTPVAAKLG-LPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLAL 122
Query: 551 VY 556
VY
Sbjct: 123 VY 124
>At3g46980.2 68416.m05102 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 469
Score = 75.4 bits (177), Expect = 3e-14
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +2
Query: 188 RVNISMAIVDMTDERKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITI 367
RV +S+AIV ++ R WS S +V SSF WGY+I + G L ++GGK ++
Sbjct: 129 RVVMSVAIVPLSLSR-----GWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAW 183
Query: 368 SVSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEK 532
V++ +L + L P AA W L+ R + G + PCM+++V++W P E+
Sbjct: 184 GVALWSLATFLTPWAADSSLWALL-AARAMVGVAEGVALPCMNNMVARWFPPTER 237
>At3g46980.1 68416.m05101 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 533
Score = 75.4 bits (177), Expect = 3e-14
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +2
Query: 188 RVNISMAIVDMTDERKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITI 367
RV +S+AIV ++ R WS S +V SSF WGY+I + G L ++GGK ++
Sbjct: 129 RVVMSVAIVPLSLSR-----GWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAW 183
Query: 368 SVSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEK 532
V++ +L + L P AA W L+ R + G + PCM+++V++W P E+
Sbjct: 184 GVALWSLATFLTPWAADSSLWALL-AARAMVGVAEGVALPCMNNMVARWFPPTER 237
>At2g38060.1 68415.m04672 transporter-related low similarity to
vesicular glutamate transporter 3 [Homo sapiens]
GI:21213895, brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 512
Score = 75.4 bits (177), Expect = 3e-14
Identities = 42/115 (36%), Positives = 63/115 (54%)
Frame = +2
Query: 188 RVNISMAIVDMTDERKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITI 367
RV +S+A+V + D+ WS S VV SSF WGY+ V G L ++GGK ++
Sbjct: 116 RVVMSVAVVPLADK-----LGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAW 170
Query: 368 SVSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEK 532
V++ +L +LL P AA L+CV R G + P M L+S+W P++E+
Sbjct: 171 GVALWSLATLLTPWAAAHSTLALLCV-RAFFGLAEGVAMPSMTTLLSRWFPMDER 224
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 69.7 bits (163), Expect = 1e-12
Identities = 40/123 (32%), Positives = 67/123 (54%)
Frame = +2
Query: 188 RVNISMAIVDMTDERKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITI 367
+VN+S+AI+ M+ + F WS SV +V SSFFWGY + Q+P G L++ FGG+ ++ I
Sbjct: 116 KVNLSIAIIPMSHQ-----FGWSSSVAGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLEI 170
Query: 368 SVSVNALISLLLPTAAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTT 547
V + + L+P A G + RIL G + L+++ +P++E+
Sbjct: 171 GVFTWSFATALVPLLA--GFMPGLIFSRILVGIGEGVSPSAATDLIARTIPVKERSRAVG 228
Query: 548 IVY 556
V+
Sbjct: 229 FVF 231
>At5g44370.1 68418.m05433 transporter-related similar to vesicular
glutamate transporter 2 [Mus musculus] GI:15811369,
Na-dependent inorganic phosphate cotransporter [Homo
sapiens] GI:7328923; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 432
Score = 68.9 bits (161), Expect = 2e-12
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Frame = +2
Query: 254 SHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPTAA-KIGDW 430
+ S + +LS+FF GY QVP G A+K GG+ ++ +S + + L+P ++G
Sbjct: 44 NQSSKGTILSTFFVGYACSQVPGGWAAQKIGGRKVLLLSFVLWSSTCFLVPLDPNRVG-- 101
Query: 431 KLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTTI 550
L+ V R+L G Q F++P +H +++QWVP E+ L +I
Sbjct: 102 -LLVVARLLVGVAQGFIFPSIHTVLAQWVPPHERSRLVSI 140
>At4g35300.2 68417.m05018 transporter-related low similarity to
hexose transporter [Solanum tuberosum] GI:8347246;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 729
Score = 34.3 bits (75), Expect = 0.065
Identities = 23/107 (21%), Positives = 55/107 (51%)
Frame = +2
Query: 230 RKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPT 409
+K+ + + SV+ ++++ G ++ +G +A G +P++ +S + + SL++
Sbjct: 33 KKEFNLESNPSVEGLIVAMSLIGATLITTCSGGVADWLGRRPMLILSSILYFVGSLVMLW 92
Query: 410 AAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTTI 550
+ + ++ + R+L GF V + +S+ P E +GLL T+
Sbjct: 93 SPNV---YVLLLGRLLDGFGVGLVVTLVPIYISETAPPEIRGLLNTL 136
>At4g35300.1 68417.m05017 transporter-related low similarity to
hexose transporter [Solanum tuberosum] GI:8347246;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 739
Score = 34.3 bits (75), Expect = 0.065
Identities = 23/107 (21%), Positives = 55/107 (51%)
Frame = +2
Query: 230 RKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPT 409
+K+ + + SV+ ++++ G ++ +G +A G +P++ +S + + SL++
Sbjct: 33 KKEFNLESNPSVEGLIVAMSLIGATLITTCSGGVADWLGRRPMLILSSILYFVGSLVMLW 92
Query: 410 AAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTTI 550
+ + ++ + R+L GF V + +S+ P E +GLL T+
Sbjct: 93 SPNV---YVLLLGRLLDGFGVGLVVTLVPIYISETAPPEIRGLLNTL 136
>At3g51490.1 68416.m05639 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 729
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/106 (17%), Positives = 51/106 (48%)
Frame = +2
Query: 230 RKDEYFDWSHSVQSVVLSSFFWGYVILQVPAGELARKFGGKPLITISVSVNALISLLLPT 409
+K+ + + ++ ++++ G ++ +G ++ K G + ++ +S + L S+++
Sbjct: 33 KKEFHLEKEPKIEGLIVAMSLIGATLITTFSGPVSDKVGRRSMLILSSVLYFLSSIVMFW 92
Query: 410 AAKIGDWKLVCVCRILQGFTQAFVYPCMHHLVSQWVPLEEKGLLTT 547
+ + ++ R+L GF + +S+ P E +GLL T
Sbjct: 93 SPNV---YVLLFARLLDGFGIGLAVTLVPIYISETAPSEIRGLLNT 135
>At5g38070.1 68418.m04587 zinc finger (C3HC4-type RING finger)
family protein contains InterPro Entry IPR001841
Zn-finger, RING; contains PROSITE PS00190: Cytochrome c
family heme-binding site signature
Length = 259
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 508 PVGTSGRERIAHHHCLRRW 564
P SG + AHH+C++RW
Sbjct: 69 PCSCSGTLKFAHHNCVQRW 87
>At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase family
protein / mutM, putative (MMH-1) identical to mutM
homologue-2 [Arabidopsis thaliana] GP:3550983
PMID:9819050; contains Pfam profile PF01149:
Formamidopyrimidine-DNA glycosylase
Length = 390
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 502 EMVHTRVHECLREALEDSADAHQFP 428
E +HT + E + +A+E AD+ QFP
Sbjct: 213 EALHTSIKEVIEKAVEVDADSSQFP 237
>At5g57360.1 68418.m07166 F-box family protein / LOV kelch protein 1
(LKP1) E3 ubiquitin ligase SCF complex F-box subunit;
identical to clock-associated PAS protein ZTL; ZEITLUPE
GI:7839456, LOV kelch protein 1 GI:11610573, Adagio 1
GI:13487068 from [Arabidopsis thaliana]; contains Pfam
profile PF01344: Kelch motif; identical to cDNA Adagio 1
(ADO1) GI:13487067; identical to cDNA LKP1 mRNA for LOV
kelch protein 1, GI:11610572
Length = 609
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 532 FLFQRYPLADEMVHTRVHECLREALEDSADAHQF 431
F +R+PL D MV + + +C+ E +E + F
Sbjct: 91 FAKRRHPLVDSMVVSEIRKCIDEGIEFQGELLNF 124
>At3g46920.1 68416.m05092 protein kinase family protein similar to
MAP3K delta-1 protein kinase [Arabidopsis thaliana]
GI:2253010; contains Pfam profile: PF00069 Eukaryotic
protein kinase domain
Length = 1171
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 539 AILSLPEVPTG*RDGAYKGTRMPA*SLGGF-GRRTPVSNH 423
A L +PT R+ AY+GT P G+ G + P SNH
Sbjct: 404 AAQKLVPLPTEPRNTAYQGTISPGIPFDGYGGSQVPPSNH 443
>At3g14710.1 68416.m01860 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 442
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 279 KTTDCTLWLQSKYSSFLSSVMSTMAMLMLTLIMNATSIARKS-SIVWT 139
KT C+ + K+SS L SV+S + + T +TS+ KS +WT
Sbjct: 16 KTKLCSENFEDKFSSLLESVVSIILSQLPTAEAVSTSVLSKSWKNIWT 63
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 85 GCCYKCVGNKTQRPRHPSCPDYTTFPGDAGGVH 183
G C KC Q HPSC F GG H
Sbjct: 1129 GACTKCSYGNCQTTFHPSCARSAGFHMTGGGKH 1161
>At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
GI:3869280 from [Carica papaya]
Length = 724
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 281 SSFFWGYVILQVPAGELARKFGGKPLITISVSVNAL 388
S +FW + + +GE K G PL+T+ + +AL
Sbjct: 467 SDYFWYITDITIGSGETFLKTGDSPLLTVMSAGHAL 502
>At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase family
protein / mutM, putative (MMH-1) identical to mutM
homologue-2 [Arabidopsis thaliana] GP:3550983
PMID:9819050; contains Pfam profile PF01149:
Formamidopyrimidine-DNA glycosylase
Length = 274
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = -2
Query: 502 EMVHTRVHECLREALEDSADAHQFPI 425
E +HT + E ++ A++ +AD+ +FP+
Sbjct: 213 EALHTSIKEVIQHAVQVNADSKEFPV 238
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 27.5 bits (58), Expect = 7.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +2
Query: 425 DWKLVCVCRILQGFTQAFVYPCMH 496
D + C C++ +T F+Y C H
Sbjct: 360 DGETYCQCKVYDVYTDGFIYKCHH 383
>At1g29890.1 68414.m03653 acetyltransferase-related low similarity
to O-acetyltransferase [Cryptococcus neoformans var.
neoformans] GI:17063556
Length = 470
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 426 IGNWCASAESSKASRRHSC-TLVCTISSASGYLW 524
+ W E A RR S T + ISS +GYLW
Sbjct: 289 VERWMEKLEECDAKRRMSIKTSIIGISSFAGYLW 322
>At3g18540.1 68416.m02358 expressed protein
Length = 268
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 88 CCYKCVGNKTQRPRHPSCPDYTTFPGDAGGVHD 186
C Y +G T P+ P + T GD+ G D
Sbjct: 114 CVYGIIGLSTISPKEDKIPKWNTATGDSDGGRD 146
>At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein
similar to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profiles PF00646:
F-box domain, PF00578: AhpC/TSA family
Length = 553
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 32 CASKKNCK*INENKREKMGVATNALEIRPKGLGIR 136
C+ K+ K + + E + + LE++ KGLG+R
Sbjct: 88 CSENKHVKFVEDGSGEYIQLLGLELEVKDKGLGVR 122
>At1g26510.1 68414.m03231 F-box family protein contains F-box domain
Pfam:PF00646
Length = 686
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = -3
Query: 294 QKNEDKTTDCTLWLQSKYSSFLSSVMSTMAMLMLTLIMNATSIARKSSIVWT*RMPRPLG 115
+K+++K L L + F + ++A LTL + + R S + + R P+P
Sbjct: 15 EKSKEKNKFDQLPLDLEIEIFRRLPLKSVARF-LTLSKSCAATIRSPSFITSFRSPQPCT 73
Query: 114 LISNAFVATPIFSLLFSF 61
LI++A PIF+ L F
Sbjct: 74 LIASA----PIFNCLHPF 87
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,597
Number of Sequences: 28952
Number of extensions: 294218
Number of successful extensions: 902
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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