Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p21r
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    27   2.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   2.5  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   4.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   7.7  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.7  
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    25   7.7  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.7  

>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 199 EEHFFLPYKFGDAKM 155
           ++HFF+PY FG A++
Sbjct: 212 DDHFFIPYIFGSAQL 226


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 288 DADSPDASTGRRRESHVENPPVNCSSTAHNK 380
           +A +P +   RRR +H+ NPP    + A N+
Sbjct: 139 NAHAPHSQNRRRRSNHLNNPPEAPITEASNE 169


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 277 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSL-SLEVILPILKA 429
           VDP+T  ALT  P   V  +  + Q    +   +K +K L ++E   P+L+A
Sbjct: 529 VDPKTGKALTNNPVPPVETSSSSGQNFFGSFFGSKNKKRLAAMEPPPPVLRA 580


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 424 KALALSVDLGSATSLVDTATIAVNTNNRANFILQEICTGTQN 549
           +A ALS  + ++TSL    T A+ TN+++   L E C    N
Sbjct: 447 QAQALSTQISASTSLSTVLTQALKTNDQS---LLESCFNNNN 485


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 262  TLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLE 405
            +L NC+        +R+  G  N +   RQLI  AR+     + L L+
Sbjct: 1340 SLKNCISQLEDGLYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLD 1387


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 183 YRTNLGTLKCIFWTFTCKYTKFLFFCLHKKFVLPIFLINNSRIYYRSFLV 34
           Y   L +   I W    KY K + FCLH    L I +   + I +R+ ++
Sbjct: 88  YGQQLASQSFIAWLGEEKYQKLVNFCLHYIADLDIPVKRGTFIEFRNGMI 137


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 472 DTATIAVNTNNRANFILQEIC 534
           D++++  +TNNR + +L+E+C
Sbjct: 92  DSSSLPSSTNNRYSSVLKELC 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,404
Number of Sequences: 5004
Number of extensions: 38425
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)