Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p20r
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             77   5e-15
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   8e-07
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)                     27   6.7  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         27   8.8  
SB_35862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 47/79 (59%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
 Frame = -1

Query: 377 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 198
           MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH        V   R G+
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH--------VAQPRIGE 52

Query: 197 IVVN-LTGRLNKCGVISPR 144
           +V    +G L+  GV+  R
Sbjct: 53  MVTRPCSGALSAAGVVVTR 71


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 22/28 (78%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = -1

Query: 164 CGVISPRFDVPINDIERW-TNLLPSRQF 84
           CGVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 344 KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 219
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
          Length = 549

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 155 ISPRFDVPINDIERWTNLLPSRQFGYL 75
           ISP F VP  D ++ ++L+PS+Q  +L
Sbjct: 381 ISPIFTVPKKDGKKKSSLIPSQQITFL 407


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 13  SSRCFLLASSWSMMPPLVVRTR*PN 87
           ++R  +  S  S++PPL VRT  PN
Sbjct: 329 NARSLIYISGTSLVPPLTVRTETPN 353


>SB_35862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 46  SMMPPLVVRTR*PNCREGSRLVHLSISLMGTSKRGEMT 159
           S + PL++ TR PN RE  R+V   + + G+   G +T
Sbjct: 277 SALDPLILATRLPNIREAVRIV---LGIRGSRVGGAIT 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,615,180
Number of Sequences: 59808
Number of extensions: 240803
Number of successful extensions: 1160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)