Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p20r
(434 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 204 2e-53
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 204 2e-53
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 204 2e-53
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 201 2e-52
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 193 4e-50
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 120 3e-28
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 120 4e-28
At1g18390.1 68414.m02297 protein kinase family protein contains ... 29 1.4
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi... 29 1.8
At3g47340.3 68416.m05147 asparagine synthetase 1 [glutamine-hydr... 27 4.1
At3g47340.2 68416.m05146 asparagine synthetase 1 [glutamine-hydr... 27 4.1
At3g47340.1 68416.m05145 asparagine synthetase 1 [glutamine-hydr... 27 4.1
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy... 27 5.5
At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,... 26 9.5
At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,... 26 9.5
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 204 bits (498), Expect = 2e-53
Identities = 97/124 (78%), Positives = 110/124 (88%), Gaps = 1/124 (0%)
Frame = -1
Query: 377 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 198
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 197 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 21
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 20 LEEK 9
+ K
Sbjct: 121 VGGK 124
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 204 bits (498), Expect = 2e-53
Identities = 97/124 (78%), Positives = 110/124 (88%), Gaps = 1/124 (0%)
Frame = -1
Query: 377 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 198
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 197 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 21
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 20 LEEK 9
+ K
Sbjct: 121 VGGK 124
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 204 bits (498), Expect = 2e-53
Identities = 97/124 (78%), Positives = 110/124 (88%), Gaps = 1/124 (0%)
Frame = -1
Query: 377 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 198
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 197 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 21
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 20 LEEK 9
+ K
Sbjct: 121 VGGK 124
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 201 bits (490), Expect = 2e-52
Identities = 95/124 (76%), Positives = 109/124 (87%), Gaps = 1/124 (0%)
Frame = -1
Query: 377 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 198
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 197 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 21
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
Query: 20 LEEK 9
+ K
Sbjct: 121 VGGK 124
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 193 bits (471), Expect = 4e-50
Identities = 91/124 (73%), Positives = 106/124 (85%), Gaps = 1/124 (0%)
Frame = -1
Query: 377 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 198
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 197 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 21
IVV L GRLN CGVISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHEEAR+K+
Sbjct: 67 IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126
Query: 20 LEEK 9
+ K
Sbjct: 127 VGGK 130
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 120 bits (290), Expect = 3e-28
Identities = 56/116 (48%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Frame = -1
Query: 362 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 183
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 182 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHL 18
GR+N C ++ R DV N+I ++T LP+RQ+GY+V+TT GI+DHEEA ++++
Sbjct: 65 QGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 120 bits (289), Expect = 4e-28
Identities = 55/116 (47%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Frame = -1
Query: 362 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 183
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 182 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHL 18
GR+N C ++ R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++
Sbjct: 65 QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 299 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 192
+RPC + LT + +G+ E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
histidine--tRNA ligase, putative similar to SP|P12081
Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
PF00587: tRNA synthetase class II core domain (G, H, P,
S and T), PF03129: Anticodon binding domain
Length = 479
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 278 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 114
IVK LT ++ IG++E+ +HR K+ L G L CGV +F + I++
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRTICSSIDK 224
>At3g47340.3 68416.m05147 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 456
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 77 LVLTTSGGIMDHEEARRKHLEEKFR 3
+V+T +G I +HEE R++ KFR
Sbjct: 70 IVVTVNGEIYNHEELRKRLKNHKFR 94
>At3g47340.2 68416.m05146 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 512
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 77 LVLTTSGGIMDHEEARRKHLEEKFR 3
+V+T +G I +HEE R++ KFR
Sbjct: 70 IVVTVNGEIYNHEELRKRLKNHKFR 94
>At3g47340.1 68416.m05145 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 584
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 77 LVLTTSGGIMDHEEARRKHLEEKFR 3
+V+T +G I +HEE R++ KFR
Sbjct: 70 IVVTVNGEIYNHEELRKRLKNHKFR 94
>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
conatins Pfam profile: PF00067 cytochrome P450
Length = 407
Score = 27.1 bits (57), Expect = 5.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -1
Query: 287 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN----LTGRLNKCGVISPRFDVPINDI 120
S +I L ++ K IG F+I DH G + V+ LTG L + + S + + D+
Sbjct: 195 SNLISAMLNMINKPTNIGSFKITSDHLKGVMSVSVYDFLTGTLIRATLGSNKERITEEDL 254
Query: 119 ER 114
E+
Sbjct: 255 EK 256
>At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = -1
Query: 170 NKCGVISPRF-------DVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLEE 12
N+CGV + RF V +ND W FGYL+ SG + E + E
Sbjct: 142 NECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQME 201
Query: 11 KF 6
KF
Sbjct: 202 KF 203
>At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = -1
Query: 170 NKCGVISPRF-------DVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLEE 12
N+CGV + RF V +ND W FGYL+ SG + E + E
Sbjct: 142 NECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQME 201
Query: 11 KF 6
KF
Sbjct: 202 KF 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,897,404
Number of Sequences: 28952
Number of extensions: 165914
Number of successful extensions: 345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -