Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p20f
(468 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205; Euka... 247 1e-64
UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a pro... 229 3e-59
UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14; Mag... 219 3e-56
UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155... 211 5e-54
UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a pro... 209 3e-53
UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal ... 197 9e-50
UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5; Magn... 136 2e-31
UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24; Archae... 134 1e-30
UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14; Euryar... 129 3e-29
UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12; Archae... 128 8e-29
UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1; Enceph... 127 1e-28
UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4; Euryarc... 115 6e-25
UniRef50_O28369 Cluster: 30S ribosomal protein S8P; n=3; Euryarc... 114 1e-24
UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum l... 109 3e-23
UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3; Thermop... 105 4e-22
UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcu... 60 2e-19
UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1; Nanoarc... 86 4e-16
UniRef50_UPI0000DA3D5D Cluster: PREDICTED: similar to ribosomal ... 52 6e-06
UniRef50_Q50304 Cluster: 30S ribosomal protein S8; n=7; Mollicut... 48 8e-05
UniRef50_Q2GL45 Cluster: 30S ribosomal protein S8; n=8; Ricketts... 45 7e-04
UniRef50_Q7M8E6 Cluster: 30S ribosomal protein S8; n=26; Epsilon... 44 0.002
UniRef50_Q2S3Q0 Cluster: 30S ribosomal protein S8; n=2; Sphingob... 44 0.002
UniRef50_Q8A490 Cluster: 30S ribosomal protein S8; n=15; Bacteri... 44 0.002
UniRef50_Q81VR6 Cluster: 30S ribosomal protein S8; n=96; cellula... 44 0.002
UniRef50_P46757 Cluster: Mitochondrial ribosomal protein S8; n=1... 43 0.003
UniRef50_Q2YIA3 Cluster: Ribosomal protein S8; n=20; Halimeda|Re... 42 0.005
UniRef50_Q0JQL2 Cluster: Os01g0153200 protein; n=4; Oryza sativa... 42 0.005
UniRef50_A1USQ8 Cluster: 30S ribosomal protein S8; n=5; Bacteria... 42 0.009
UniRef50_Q6MJ26 Cluster: 30S ribosomal protein S8; n=1; Bdellovi... 40 0.021
UniRef50_Q8XV26 Cluster: 30S ribosomal protein S8; n=18; Proteob... 40 0.027
UniRef50_UPI0000E1E986 Cluster: PREDICTED: hypothetical protein;... 40 0.036
UniRef50_Q7XYA5 Cluster: Ribosome protein S8; n=1; Griffithsia j... 40 0.036
UniRef50_Q62GL9 Cluster: 30S ribosomal protein S8; n=68; Bacteri... 40 0.036
UniRef50_Q2JIL4 Cluster: 30S ribosomal protein S8; n=93; cellula... 39 0.063
UniRef50_Q0EW50 Cluster: Ribosomal protein S8; n=4; Proteobacter... 38 0.083
UniRef50_P56801 Cluster: Chloroplast 30S ribosomal protein S8; n... 38 0.11
UniRef50_Q9ZCR9 Cluster: 30S ribosomal protein S8; n=9; Ricketts... 37 0.19
UniRef50_Q9G903 Cluster: Ribosomal protein S8; n=1; Ochromonas d... 37 0.25
UniRef50_Q2GEC5 Cluster: 30S ribosomal protein S8; n=1; Neoricke... 36 0.33
UniRef50_A6GZ85 Cluster: 30S ribosomal protein S8; n=10; Bacteri... 36 0.33
UniRef50_UPI000049945C Cluster: hypothetical protein 90.t00021; ... 36 0.44
UniRef50_Q3S2A0 Cluster: Ribosomal protein S8; n=1; Thalassiosir... 35 0.77
UniRef50_Q06SG0 Cluster: Chloroplast 30S ribosomal protein S8; n... 35 0.77
UniRef50_A6DRC4 Cluster: 30S ribosomal protein S8; n=1; Lentisph... 34 1.3
UniRef50_Q9TAI6 Cluster: Ribosomal protein S8; n=1; Cafeteria ro... 34 1.3
UniRef50_Q9HWE9 Cluster: 30S ribosomal protein S8; n=46; Bacteri... 34 1.3
UniRef50_A7PGU8 Cluster: Chromosome chr17 scaffold_16, whole gen... 34 1.8
UniRef50_P73307 Cluster: 30S ribosomal protein S8; n=9; cellular... 34 1.8
UniRef50_O21254 Cluster: Ribosomal protein S8; n=1; Reclinomonas... 33 2.4
UniRef50_Q6D8U4 Cluster: Putative uncharacterized protein; n=1; ... 33 3.1
UniRef50_A2WMK5 Cluster: Putative uncharacterized protein; n=2; ... 33 3.1
UniRef50_Q76YD0 Cluster: Putative uncharacterized protein; n=1; ... 33 3.1
UniRef50_Q7NEG6 Cluster: 30S ribosomal protein S8; n=165; Bacter... 32 5.4
UniRef50_P59031 Cluster: 30S ribosomal protein S8; n=8; Chlorobi... 32 5.4
UniRef50_Q73NX9 Cluster: ISTde2, transposase; n=4; Bacteria|Rep:... 32 7.2
UniRef50_O67566 Cluster: 30S ribosomal protein S8; n=2; Aquifex|... 32 7.2
UniRef50_A6GH34 Cluster: Rieske (2Fe-2S) region; n=1; Plesiocyst... 31 9.5
>UniRef50_P62244 Cluster: 40S ribosomal protein S15a; n=205;
Eukaryota|Rep: 40S ribosomal protein S15a - Homo sapiens
(Human)
Length = 130
Score = 247 bits (604), Expect = 1e-64
Identities = 115/130 (88%), Positives = 124/130 (95%), Gaps = 1/130 (0%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 414
IVVNLTGRLNKCGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARRKH
Sbjct: 61 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120
Query: 415 LGGKILGFFF 444
GGKILGFFF
Sbjct: 121 TGGKILGFFF 130
>UniRef50_UPI0000608089 Cluster: PREDICTED: similar to Rps15a
protein; n=5; Amniota|Rep: PREDICTED: similar to Rps15a
protein - Mus musculus
Length = 253
Score = 229 bits (559), Expect = 3e-59
Identities = 108/130 (83%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV FLTVMMKHGY GEFEI+DDHR GK
Sbjct: 124 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVWFLTVMMKHGYTGEFEIIDDHRDGK 183
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 414
IVVNLTGRLNKCGVIS RFDV + D+++W NLLP RQFG++VLTT GI+DHEEARRKH
Sbjct: 184 IVVNLTGRLNKCGVISLRFDVQLKDLDKWQNNLLPLRQFGFIVLTTLAGIIDHEEARRKH 243
Query: 415 LGGKILGFFF 444
GGKILGFFF
Sbjct: 244 TGGKILGFFF 253
>UniRef50_Q9LX88 Cluster: 40S ribosomal protein S15a-4; n=14;
Magnoliophyta|Rep: 40S ribosomal protein S15a-4 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 130
Score = 219 bits (534), Expect = 3e-56
Identities = 101/130 (77%), Positives = 117/130 (90%), Gaps = 1/130 (0%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 414
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
Query: 415 LGGKILGFFF 444
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>UniRef50_A6NIS3 Cluster: Uncharacterized protein ENSP00000348155;
n=33; Eukaryota|Rep: Uncharacterized protein
ENSP00000348155 - Homo sapiens (Human)
Length = 129
Score = 211 bits (516), Expect = 5e-54
Identities = 100/130 (76%), Positives = 114/130 (87%), Gaps = 1/130 (0%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MVR NVL+DALK I+NA+KRGKRQVL+RPCS+VI++FLTVM KHGYIGEFEI DDHRAGK
Sbjct: 1 MVRTNVLADALKRINNAKKRGKRQVLLRPCSEVIIRFLTVM-KHGYIGEFEITDDHRAGK 59
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 414
+VV LT RLNKCGVISPRF V + D+E+W NLLPS QFG+++LTTS GI D EEARRKH
Sbjct: 60 MVVYLTDRLNKCGVISPRFHVQLKDLEKWQNNLLPSYQFGFIILTTSAGITDREEARRKH 119
Query: 415 LGGKILGFFF 444
GGKILGFFF
Sbjct: 120 TGGKILGFFF 129
>UniRef50_UPI0001552BC3 Cluster: PREDICTED: similar to Rps15a
protein; n=3; Mus musculus|Rep: PREDICTED: similar to
Rps15a protein - Mus musculus
Length = 239
Score = 209 bits (510), Expect = 3e-53
Identities = 98/131 (74%), Positives = 112/131 (85%), Gaps = 1/131 (0%)
Frame = +1
Query: 52 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRA 231
+ MV MNVL DALKS ++AEK GKRQ IR CSK IV+FLTVMMKHGYI EFEI+DDHRA
Sbjct: 97 VTMVEMNVLVDALKSTNSAEKGGKRQFPIRLCSKAIVRFLTVMMKHGYISEFEIIDDHRA 156
Query: 232 GKIVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 408
GK+VVNLTGRLNKCGVISPRFDV + D+E+W NLLP+RQFG++VLTT GIMD EE R+
Sbjct: 157 GKMVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPARQFGFIVLTTLAGIMDREEGRQ 216
Query: 409 KHLGGKILGFF 441
KH GG+ILGFF
Sbjct: 217 KHTGGEILGFF 227
>UniRef50_UPI0000D9C93A Cluster: PREDICTED: similar to ribosomal
protein S15a; n=1; Macaca mulatta|Rep: PREDICTED:
similar to ribosomal protein S15a - Macaca mulatta
Length = 345
Score = 197 bits (481), Expect = 9e-50
Identities = 93/117 (79%), Positives = 104/117 (88%), Gaps = 1/117 (0%)
Frame = +1
Query: 79 SDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTG 258
SDALKSI+NAEKRGKRQVLIR CSKVIV+FL+VMMKHGYIGEFEI+DDH AGKIVVNLTG
Sbjct: 174 SDALKSINNAEKRGKRQVLIRLCSKVIVRFLSVMMKHGYIGEFEIIDDHTAGKIVVNLTG 233
Query: 259 RLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 426
RLNKCGVI+ RFDV D+E+W NL PS QFG++VLTTS GIMDHEEAR+KH G +
Sbjct: 234 RLNKCGVINTRFDVQPKDLEKWRNNLFPSCQFGFIVLTTSAGIMDHEEARQKHTGSR 290
>UniRef50_Q9M0E0 Cluster: 40S ribosomal protein S15a-5; n=5;
Magnoliophyta|Rep: 40S ribosomal protein S15a-5 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 129
Score = 136 bits (330), Expect = 2e-31
Identities = 61/125 (48%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
Frame = +1
Query: 73 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 252
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 253 TGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 429
GR+N C ++ R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++
Sbjct: 65 QGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124
Query: 430 LGFFF 444
LGFF+
Sbjct: 125 LGFFY 129
>UniRef50_Q8U014 Cluster: 30S ribosomal protein S8P; n=24;
Archaea|Rep: 30S ribosomal protein S8P - Pyrococcus
furiosus
Length = 130
Score = 134 bits (323), Expect = 1e-30
Identities = 61/130 (46%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M ++ L++AL I N+E+ GKR+V I+P SK+I + L VM K+GYIGEFE +DD RAG
Sbjct: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 414
V L GR+NK G I PRF V +++ E+W LP+ +FG L+++TS G+M H+EA K
Sbjct: 61 YRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKG 120
Query: 415 LGGKILGFFF 444
+GG+++ + +
Sbjct: 121 IGGRLIAYVY 130
>UniRef50_Q8PV35 Cluster: 30S ribosomal protein S8P; n=14;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 130
Score = 129 bits (311), Expect = 3e-29
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MV ++ L++AL +I NAE GK ++RP SK I L VM GYIG+FE +DD +AG
Sbjct: 1 MVLLDPLANALSTIKNAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGI 60
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 414
V L GR+NKCG I PR+ V ERW LP++ FG L+LTTS G+M EAR K
Sbjct: 61 YSVTLVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKK 120
Query: 415 LGGKILGFFF 444
+GG++L + +
Sbjct: 121 IGGQLLAYVY 130
>UniRef50_O05636 Cluster: 30S ribosomal protein S8P; n=12;
Archaea|Rep: 30S ribosomal protein S8P - Sulfolobus
acidocaldarius
Length = 133
Score = 128 bits (308), Expect = 8e-29
Identities = 60/133 (45%), Positives = 88/133 (66%), Gaps = 4/133 (3%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M +N L++AL +++N E R +Q LI P SK+I+ L VM K GYIGEFE +DD RAGK
Sbjct: 1 MPSINPLANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGK 60
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERWTN----LLPSRQFGYLVLTTSGGIMDHEEAR 405
I+V L GR+NKCG ISPR+ + N + R + LPS++ G ++++T G+M H +
Sbjct: 61 IIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGI 120
Query: 406 RKHLGGKILGFFF 444
R+ +GG LG+ +
Sbjct: 121 REKIGGVTLGYVY 133
>UniRef50_Q8SQL9 Cluster: 40S RIBOSOMAL PROTEIN S15A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S15A
- Encephalitozoon cuniculi
Length = 128
Score = 127 bits (307), Expect = 1e-28
Identities = 58/124 (46%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
L++ K+I+NA + GKRQ+L+R ++ + FL M++HGYI F + D R+GK +++L
Sbjct: 5 LANMCKAINNASRAGKRQLLLRFSTEEMRMFLLQMLRHGYISGFSYIHDKRSGKSIIDLN 64
Query: 256 GRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 432
GRLN+CG ISP + V + IE + T LLP+RQFG+++ TS GI+DH+E +++GGKIL
Sbjct: 65 GRLNRCGAISPNYIVKRDGIEDFRTRLLPARQFGHVLFNTSKGILDHKECLTENVGGKIL 124
Query: 433 GFFF 444
G+F+
Sbjct: 125 GYFY 128
>UniRef50_Q6L1B2 Cluster: 30S ribosomal protein S8P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Picrophilus torridus
Length = 129
Score = 115 bits (276), Expect = 6e-25
Identities = 53/124 (42%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
L+D + +I NA + GK +V+I P S +I + L VM + YI FE++++ R GK V L+
Sbjct: 6 LNDVINTIKNASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELS 65
Query: 256 GRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 432
+N CGVI PR V ++IER+ + LP++ FG ++LTT+ GIM H EAR+ +GGK+L
Sbjct: 66 DTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLL 125
Query: 433 GFFF 444
+ +
Sbjct: 126 AYVY 129
>UniRef50_O28369 Cluster: 30S ribosomal protein S8P; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8P -
Archaeoglobus fulgidus
Length = 129
Score = 114 bits (274), Expect = 1e-24
Identities = 52/127 (40%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 246
++ LS+A+ +I NAE G+++ I+P SK+I L VM +GYI FE V++HR GK +V
Sbjct: 3 VDTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIV 62
Query: 247 NLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGG 423
L+G +N CG I PRF + + E + LP+R FG L+++T+ G+M ++AR++ LGG
Sbjct: 63 ELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGG 122
Query: 424 KILGFFF 444
+L + +
Sbjct: 123 VLLAYVY 129
>UniRef50_A7D102 Cluster: Ribosomal protein S8; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein S8 -
Halorubrum lacusprofundi ATCC 49239
Length = 147
Score = 109 bits (262), Expect = 3e-23
Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 1/132 (0%)
Frame = +1
Query: 52 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRA 231
L M + ++AL + NAE G + P S +I L V+ GY+ FE VDD +A
Sbjct: 16 LIMTGNDPFTNALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKA 75
Query: 232 GKIVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 408
GK V L G +N+CG + PR+ ++ E+W LP+R +G L++TTS G+M H EAR
Sbjct: 76 GKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEARE 135
Query: 409 KHLGGKILGFFF 444
+ +GG+++ + +
Sbjct: 136 EGIGGQVIAYVY 147
>UniRef50_A0RVY8 Cluster: 30S ribosomal protein S8P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S8P -
Cenarchaeum symbiosum
Length = 130
Score = 105 bits (253), Expect = 4e-22
Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M N+L++ +++N E R + + P SK+ V+ L + K GYIGEFE V+D R GK
Sbjct: 1 MPATNILANLFVTLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGK 60
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKH 414
V+L ++ KCG ISPRF V + W LPS G LV+TT+ G+M H EA +
Sbjct: 61 FSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERG 120
Query: 415 LGGKILGFFF 444
+GG ++G+ +
Sbjct: 121 IGGFLIGYVY 130
>UniRef50_Q01GJ6 Cluster: Ribosomal protein S15; n=1; Ostreococcus
tauri|Rep: Ribosomal protein S15 - Ostreococcus tauri
Length = 144
Score = 60.1 bits (139), Expect(2) = 2e-19
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +1
Query: 190 GYIGEFEIVDDHRAGKIVVNLTGRLNKCGVI 282
GYI EFE +DDHRAGKIVV L GR+NKCGVI
Sbjct: 107 GYINEFEFIDDHRAGKIVVELNGRINKCGVI 137
Score = 57.2 bits (132), Expect(2) = 2e-19
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +1
Query: 52 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 189
++ V + + +S++NAEKRGKRQVL+RP SKV++KFL VM KH
Sbjct: 31 VSSVALTSIFHRAESMYNAEKRGKRQVLVRPVSKVVIKFLQVMQKH 76
>UniRef50_Q74NG1 Cluster: 30S ribosomal protein S8P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S8P -
Nanoarchaeum equitans
Length = 129
Score = 85.8 bits (203), Expect = 4e-16
Identities = 37/126 (29%), Positives = 74/126 (58%), Gaps = 1/126 (0%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 249
++++D L + N ++G+ + P S +I+K + +M + GYI + +VD R I +
Sbjct: 4 DIVADFLSHLTNVRRKGEDKTAFFPVSNLIIKLVEIMKREGYIKNYRLVDSSRGKIIEIE 63
Query: 250 LTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 426
L+ N+ I PRF V +++E++ LP+ FG L+L+TS G++ + EA+ + +GG
Sbjct: 64 LSEYFNEANAIKPRFPVEYSELEKYEKRYLPALNFGRLILSTSKGLITNREAKEQKIGGV 123
Query: 427 ILGFFF 444
++ + +
Sbjct: 124 LIAYVY 129
>UniRef50_UPI0000DA3D5D Cluster: PREDICTED: similar to ribosomal
protein S15a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S15a - Rattus norvegicus
Length = 60
Score = 52.0 bits (119), Expect = 6e-06
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = +1
Query: 166 FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 321
F+TV MK G+FEIVD+ G+I V+L G LNK GVI FDV + D+E+
Sbjct: 3 FVTVKMK---TGKFEIVDNEGVGRITVSLMGSLNKYGVIGLGFDVQLGDLEK 51
>UniRef50_Q50304 Cluster: 30S ribosomal protein S8; n=7;
Mollicutes|Rep: 30S ribosomal protein S8 - Mycoplasma
pneumoniae
Length = 142
Score = 48.4 bits (110), Expect = 8e-05
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
++D L I+NA K K + SK+ + L +++K GY+ F+++++ K +V
Sbjct: 15 VADLLTKINNARK-AKLMTVTTIASKLKIAILEILVKEGYLANFQVLENKSKTKRIVTFN 73
Query: 256 GRLNKCGVIS----PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEARRKHL 417
+ + + S + P I R LP G +++TS G+M + AR K +
Sbjct: 74 LKYTQRRIPSINGVKQISKPGLRIYRPFEKLPLVLNGLGIAIISTSDGVMTDKVARLKKI 133
Query: 418 GGKILGF 438
GG+IL +
Sbjct: 134 GGEILAY 140
>UniRef50_Q2GL45 Cluster: 30S ribosomal protein S8; n=8;
Rickettsiales|Rep: 30S ribosomal protein S8 - Anaplasma
phagocytophilum (strain HZ)
Length = 133
Score = 45.2 bits (102), Expect = 7e-04
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEF-EIVDDHRAGKIVVNL 252
++D L + N + G +V+ PCSKV++ L ++++ GYI F E V K++
Sbjct: 7 IADFLTRLRNGQA-GMNKVVYVPCSKVVMAVLRILVEEGYIESFTEEVRGDSGIKVLKVF 65
Query: 253 TGRLNKCGVISP--RFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEARRKHLG 420
N I R P + + +P G +++TS GIM AR +G
Sbjct: 66 LKYFNSAAAIRKIVRVSRPGKRVYSSADKMPRFYNALGIYIVSTSKGIMLDSHARNAGVG 125
Query: 421 GKIL 432
G+IL
Sbjct: 126 GEIL 129
>UniRef50_Q7M8E6 Cluster: 30S ribosomal protein S8; n=26;
Epsilonproteobacteria|Rep: 30S ribosomal protein S8 -
Wolinella succinogenes
Length = 131
Score = 44.0 bits (99), Expect = 0.002
Identities = 34/127 (26%), Positives = 69/127 (54%), Gaps = 6/127 (4%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 249
++++D+L I NA R + +K++V L V + G+I ++++D + GK +N
Sbjct: 4 DIIADSLTRIRNAAMRRLDYTTLY-YAKIVVSILEVFLAKGFIESYKVID--KDGKQSIN 60
Query: 250 LTGRLNKCG--VISP--RFDVPINDIERWTNLLPSRQFGY--LVLTTSGGIMDHEEARRK 411
+ + ++ G VIS R + + + L + GY +V++TS G++ +EEA +
Sbjct: 61 VVLKYDEKGRSVISEIKRISKSGRRVYKGRDELKRFKNGYGTIVVSTSKGVIGNEEAYKA 120
Query: 412 HLGGKIL 432
++GG+ L
Sbjct: 121 NVGGEAL 127
>UniRef50_Q2S3Q0 Cluster: 30S ribosomal protein S8; n=2;
Sphingobacteriales|Rep: 30S ribosomal protein S8 -
Salinibacter ruber (strain DSM 13855)
Length = 133
Score = 44.0 bits (99), Expect = 0.002
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
+S+ + + NA++ + V I P SK+ ++++ GYI F +DD + G + V L
Sbjct: 8 VSNYMAQLRNAQEAEQTYVDI-PASKLKRAMTQILLEKGYIKNFVNIDDEKQGLLRVYLK 66
Query: 256 -GRLNKCGV-ISPRFDVPINDIERWTNLLP--SRQFGYLVLTTSGGIMDHEEARRKHLGG 423
++ + + R P ++ LP G ++L+TS G+M +EARR +GG
Sbjct: 67 YDEYDQPAIRMLERVSRPGRREYADSDNLPEVKNGLGIVILSTSRGVMSDKEARRFGVGG 126
Query: 424 KILGFFF 444
++L F
Sbjct: 127 EVLAKVF 133
>UniRef50_Q8A490 Cluster: 30S ribosomal protein S8; n=15;
Bacteria|Rep: 30S ribosomal protein S8 - Bacteroides
thetaiotaomicron
Length = 131
Score = 44.0 bits (99), Expect = 0.002
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
++D L + NA K +V+ P S + + ++ + GYI ++ V+D G I V L
Sbjct: 5 IADYLTRLRNAIG-AKHRVVEVPASNLKKEITKILFEKGYILNYKFVEDGPQGTIKVALK 63
Query: 256 -GRLNKCGVISPRFDVPINDIERWTNL--LPS--RQFGYLVLTTSGGIMDHEEARRKHLG 420
+NK I V + ++T +P G +++TS G+M ++EA +G
Sbjct: 64 YDSVNKVNAIKKLERVSSPGMRKYTGYKDMPRVINGLGIAIISTSKGVMTNKEAAELKIG 123
Query: 421 GKILGFFF 444
G++L + +
Sbjct: 124 GEVLCYVY 131
>UniRef50_Q81VR6 Cluster: 30S ribosomal protein S8; n=96; cellular
organisms|Rep: 30S ribosomal protein S8 - Bacillus
anthracis
Length = 132
Score = 44.0 bits (99), Expect = 0.002
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
MV + ++D L I NA + + L P SK+ + ++ + G+I + E ++D++ G
Sbjct: 1 MVMTDPIADMLTRIRNANMV-RHEKLEVPASKIKKEIAELLKREGFIRDVEYIEDNKQGI 59
Query: 238 IVVNLTGRLNKCGVIS--PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEAR 405
+ + L N VI+ R P + + +P G +++TS G+M ++AR
Sbjct: 60 LRIFLKYGANNERVITGLKRISKPGLRVYAKADEVPRVLNGLGIALVSTSKGVMTDKDAR 119
Query: 406 RKHLGGKILGF 438
+ GG+++ +
Sbjct: 120 QLQTGGEVVAY 130
>UniRef50_P46757 Cluster: Mitochondrial ribosomal protein S8; n=1;
Acanthamoeba castellanii|Rep: Mitochondrial ribosomal
protein S8 - Acanthamoeba castellanii (Amoeba)
Length = 127
Score = 43.2 bits (97), Expect = 0.003
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV- 243
M++LS+ + + QV+++ SK+ + L+V+ K GYI F I D ++
Sbjct: 1 MSLLSNMISIVKVGYNARHLQVIVQN-SKLCINVLSVLYKLGYIRGFIIKDQKNITILLK 59
Query: 244 -VNLTGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 420
+N + VIS ++ L + G+L+L+TS GI+ EE+ +G
Sbjct: 60 YINNKPAVRNIAVISTPGRRTYLKHKKLEKFLTKKDSGFLILSTSKGILTDEESNMFKIG 119
Query: 421 GKIL 432
G+ L
Sbjct: 120 GEAL 123
>UniRef50_Q2YIA3 Cluster: Ribosomal protein S8; n=20; Halimeda|Rep:
Ribosomal protein S8 - Halimeda opuntia
Length = 133
Score = 42.3 bits (95), Expect = 0.005
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHR--- 228
MV + +SD I NA G V + P + L +++ HG+I F +++
Sbjct: 2 MVFNDSISDVFTRIRNANLVGHNTVRV-PLTLTTKSILNILVHHGFIKNFSQINNREFLV 60
Query: 229 --AGKIVVNLTGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGY-----LVLTTSGGIM 387
K V+ RL++ G R V ++ + +L S Q G + L+TS GI+
Sbjct: 61 TLKSKSVLRKLKRLSRPGC---RLYVSAQNLPQ---ILRSGQLGLAPRAIIFLSTSKGIL 114
Query: 388 DHEEARRKHLGGKILGF 438
EAR +GG+ILG+
Sbjct: 115 SDREARHLKVGGEILGY 131
>UniRef50_Q0JQL2 Cluster: Os01g0153200 protein; n=4; Oryza sativa|Rep:
Os01g0153200 protein - Oryza sativa subsp. japonica
(Rice)
Length = 1139
Score = 42.3 bits (95), Expect = 0.005
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +1
Query: 214 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 315
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>UniRef50_A1USQ8 Cluster: 30S ribosomal protein S8; n=5;
Bacteria|Rep: 30S ribosomal protein S8 - Bartonella
bacilliformis (strain ATCC 35685 / KC583)
Length = 132
Score = 41.5 bits (93), Expect = 0.009
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
L D L I NA R K +V + P SK+ + L V+ GYI + +D GK +
Sbjct: 7 LGDMLTRIRNAISRKKSKV-VTPASKLRARVLDVLKLEGYICGYNQIDSGN-GKFEFEIE 64
Query: 256 GR-LNKCGVISP--RFDVPINDIERWTN--LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 420
+ VI R P + T L + G +L+T G+M EAR +++G
Sbjct: 65 LKYFENSSVIRTISRISKPGRRVYVSTKSILQVANGLGISILSTPKGVMTDHEAREQNVG 124
Query: 421 GKIL 432
G++L
Sbjct: 125 GELL 128
>UniRef50_Q6MJ26 Cluster: 30S ribosomal protein S8; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S8
- Bdellovibrio bacteriovorus
Length = 129
Score = 40.3 bits (90), Expect = 0.021
Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 246
M+ +S L I NA K + + P SKV +++ G+I F++ D + G + V
Sbjct: 1 MDTISQFLTMIRNAGA-AKHEKVDMPASKVRAGIAQILVNEGFIRSFKVAKDSKQGIMRV 59
Query: 247 NLTGRLNKCG--VIS--PRFDVPINDIERWTNLLPSRQ--FGYLVLTTSGGIMDHEEARR 408
L + ++ G I+ R P + ++ +P+ + G +++TS GIM ++A
Sbjct: 60 YL--KYDEAGGHAINNIDRVSRPGRRVYVKSDKIPTVRSGMGMSIISTSKGIMSGKQATE 117
Query: 409 KHLGGKIL 432
+ LGG++L
Sbjct: 118 QKLGGELL 125
>UniRef50_Q8XV26 Cluster: 30S ribosomal protein S8; n=18;
Proteobacteria|Rep: 30S ribosomal protein S8 - Ralstonia
solanacearum (Pseudomonas solanacearum)
Length = 131
Score = 39.9 bits (89), Expect = 0.027
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
++D L I NA+ K V++ P SK+ V V+ GYI +F + + + + L
Sbjct: 7 IADMLTRIRNAQAVEKASVVM-PSSKLKVAIAKVLKDEGYIDDFAVTEQGGKASLTIGLK 65
Query: 256 GRLNKCGVIS-PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEARRKHLGGK 426
+ + R P + + N +P G +++T G+M AR +GG+
Sbjct: 66 YYAGRPVIERLERVSKPGLRVYKGRNEIPQVMNGLGVAIISTPQGLMTDRRARATGVGGE 125
Query: 427 IL 432
++
Sbjct: 126 VI 127
>UniRef50_UPI0000E1E986 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 116
Score = 39.5 bits (88), Expect = 0.036
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +1
Query: 196 IGEFEIVDDHRAGKIVVNLTGRLNK 270
IG+FE++DDHRAGKIV NL+ ++ +
Sbjct: 9 IGKFEVIDDHRAGKIVENLSDKVTQ 33
>UniRef50_Q7XYA5 Cluster: Ribosome protein S8; n=1; Griffithsia
japonica|Rep: Ribosome protein S8 - Griffithsia japonica
(Red alga)
Length = 142
Score = 39.5 bits (88), Expect = 0.036
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDH-----RAGKI 240
+SD I N K + + P S+ + + ++ Y+ +F IV + I
Sbjct: 12 ISDLFTRIRNGYA-AKHESIYHPYSRFSLAIVKSLISQNYLRDFRIVPPESPRHPQFDHI 70
Query: 241 VVNLTGRLNKCGVISP--RFDVPINDIERWTNLLPSRQ--FGYLVLTTSGGIMDHEEARR 408
+ L+ L I R VP + + R LP + G +L+T G+M EAR+
Sbjct: 71 EIFLSYDLRGKPAIRALRRVSVPSHRVYRKITQLPLARAGLGTWILSTPNGVMHCTEARQ 130
Query: 409 KHLGGKILGFFF 444
K LGG+++G F
Sbjct: 131 KRLGGEVIGEVF 142
>UniRef50_Q62GL9 Cluster: 30S ribosomal protein S8; n=68;
Bacteria|Rep: 30S ribosomal protein S8 - Burkholderia
mallei (Pseudomonas mallei)
Length = 131
Score = 39.5 bits (88), Expect = 0.036
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
++D L I NA+ K V + P SKV V V+ GYI +F + D ++ + L
Sbjct: 7 IADMLTRIRNAQMVEKVSVSM-PSSKVKVAIAQVLKDEGYIDDFAVKADGAKAELNIALK 65
Query: 256 GRLNKCGVIS--PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEARRKHLGG 423
+ VI R P + R N +P G +++T G+M +AR +GG
Sbjct: 66 YYAGR-PVIERLERVSKPGLRVYRGRNEIPQVMNGLGVAIVSTPKGVMTDRKARATGVGG 124
Query: 424 KIL 432
+++
Sbjct: 125 EVI 127
>UniRef50_Q2JIL4 Cluster: 30S ribosomal protein S8; n=93; cellular
organisms|Rep: 30S ribosomal protein S8 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 136
Score = 38.7 bits (86), Expect = 0.063
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 249
+ ++D L I NA V + P +++ V+ + G++ E++ + ++V+
Sbjct: 6 DTIADMLTRIRNATMARHESVAV-PATRMTRSIARVLHEEGFVSEWKEEGEGIQARVVLR 64
Query: 250 LT--GRLNKCGVIS---PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEARR 408
L G+ C I R P + R LP G +++TS GIM EAR+
Sbjct: 65 LKYKGKGRNCRPIINGLKRVSRPGLRVYRNHKELPRVLGGIGIAIISTSNGIMTDREARK 124
Query: 409 KHLGGKIL 432
+ +GG++L
Sbjct: 125 QGIGGEVL 132
>UniRef50_Q0EW50 Cluster: Ribosomal protein S8; n=4;
Proteobacteria|Rep: Ribosomal protein S8 - Mariprofundus
ferrooxydans PV-1
Length = 131
Score = 38.3 bits (85), Expect = 0.083
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDD--HRAGKI 240
M+ ++D L I NA+ G ++ + P SK ++ ++ GY+G + + HR ++
Sbjct: 3 MDRIADMLTRIRNAQMAGIERIEM-PASKTLLAMAELLKDEGYLGAVKAYNHKGHRFLRV 61
Query: 241 VVNLTGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLV--LTTSGGIMDHEEARRKH 414
+ R + + LP + GY V ++TS GIM ++AR
Sbjct: 62 TLRYDDEAKPIIREIKRISKSGRRVYVGADELPRVKNGYGVALISTSQGIMTDKKARSAQ 121
Query: 415 LGGKIL 432
+GG++L
Sbjct: 122 VGGEVL 127
>UniRef50_P56801 Cluster: Chloroplast 30S ribosomal protein S8;
n=118; Viridiplantae|Rep: Chloroplast 30S ribosomal
protein S8 - Arabidopsis thaliana (Mouse-ear cress)
Length = 134
Score = 37.9 bits (84), Expect = 0.11
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 249
+ ++D + SI NA+ K V I + + + ++++ G+I ++ +++
Sbjct: 4 DTIADIITSIRNADMNRKGTVRIGS-TNITESIVKILLREGFIENVRKHRENNQYFLILT 62
Query: 250 LTGRLNKCGVISP-----RFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEARR 408
L R NK R P I + +P G ++L+TS GIM EAR
Sbjct: 63 LRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARL 122
Query: 409 KHLGGKILGFFF 444
K +GG+IL + +
Sbjct: 123 KRIGGEILCYIW 134
>UniRef50_Q9ZCR9 Cluster: 30S ribosomal protein S8; n=9;
Rickettsia|Rep: 30S ribosomal protein S8 - Rickettsia
prowazekii
Length = 132
Score = 37.1 bits (82), Expect = 0.19
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL- 252
++D L I NA K V P SK+ L V+ K GYI ++ + V L
Sbjct: 7 VADMLTRIRNAYKSKLINVSF-PSSKIKTSILDVLQKEGYIKDYVTTQKNNISYTEVALK 65
Query: 253 ---TGRLNKCGV--ISP---RFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARR 408
G + C + +S R I D++ + N G +L+T G+M EA
Sbjct: 66 YSVNGEASICEIHRVSKPGKRVYSAIKDLKGYYN-----NMGIYILSTPYGVMSDREAHI 120
Query: 409 KHLGGKIL 432
K++GG+++
Sbjct: 121 KNVGGEVI 128
>UniRef50_Q9G903 Cluster: Ribosomal protein S8; n=1; Ochromonas
danica|Rep: Ribosomal protein S8 - Ochromonas danica
Length = 128
Score = 36.7 bits (81), Expect = 0.25
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
L D L S+ NA K V I+ S++I K+L ++ K G I F D +VNL
Sbjct: 5 LIDFLLSLKNASLAKKDFVKIKE-SRLISKYLPILYKEGIIQSFFKKQDSCNSFYIVNLR 63
Query: 256 GRLNKCGVISPR-FDVP--INDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 426
NK + P I I R + + L+L+T GIM H + R GG
Sbjct: 64 HFQNKVVTQDIQLISTPSKIKKISRKELISLHLKNKMLILSTPKGIMSHINSIRHKAGGF 123
Query: 427 IL 432
I+
Sbjct: 124 II 125
>UniRef50_Q2GEC5 Cluster: 30S ribosomal protein S8; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S8 - Neorickettsia sennetsu (strain Miyayama)
Length = 131
Score = 36.3 bits (80), Expect = 0.33
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK-IVV 246
++++DA+ I N + R+V I S+V+V+ ++ + GYI +E+++ + K I++
Sbjct: 4 SLIADAVARIRNGQMARLREVTIYH-SRVLVEIAALLKEEGYIVGYEVIEIRPSVKRIII 62
Query: 247 NLTGRLNKCG--VISPR--FDVPINDIERWTNLLPSRQ--FGYLVLTTSGGIMDHEEARR 408
L CG VIS F P I +P G VL+TS GI+ +A
Sbjct: 63 RLK---YYCGQPVISKLKLFSRPGKRIYSRACEIPKFYGGLGISVLSTSKGILPSYKAVS 119
Query: 409 KHLGGKIL 432
+ GG++L
Sbjct: 120 SNCGGELL 127
>UniRef50_A6GZ85 Cluster: 30S ribosomal protein S8; n=10;
Bacteria|Rep: 30S ribosomal protein S8 - Flavobacterium
psychrophilum (strain JIP02/86 / ATCC 49511)
Length = 132
Score = 36.3 bits (80), Expect = 0.33
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
++D L + NA K + V I P S + + ++ GYI ++ D+ G I + L
Sbjct: 6 IADYLTRVRNAAKANHKVVEI-PASNMKKEITKILFDQGYILSYKFEDNAVQGSIKIALK 64
Query: 256 -GRLNKCGVISPRFDVPINDIERWT--NLLPS--RQFGYLVLTTSGGIMDHEEARRKHLG 420
++ K VI + + +++ + +P G +++TS G+M + A++ ++G
Sbjct: 65 YDKVTKESVIRDIQRISKPGLRKYSGSSTIPRILNGLGIAIVSTSKGLMTGKLAKQLNVG 124
Query: 421 GKILGFFF 444
G+++ + +
Sbjct: 125 GEVICYVY 132
>UniRef50_UPI000049945C Cluster: hypothetical protein 90.t00021;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 90.t00021 - Entamoeba histolytica HM-1:IMSS
Length = 627
Score = 35.9 bits (79), Expect = 0.44
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 223 HRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTS 375
H G I ++L RLN+ GV+ + + +I + LL FGYL +T+S
Sbjct: 192 HEIGNIHISLLNRLNQIGVVIGIYSNMLEEIPEYVTLL--HHFGYLTITSS 240
>UniRef50_Q3S2A0 Cluster: Ribosomal protein S8; n=1; Thalassiosira
pseudonana|Rep: Ribosomal protein S8 - Thalassiosira
pseudonana (Marine diatom)
Length = 128
Score = 35.1 bits (77), Expect = 0.77
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Frame = +1
Query: 121 KRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVD-DHRAGKIVV---NLTGRLNKCGVIS- 285
+R + + +K+I+ FL ++ G+I ++I D KI + N +N IS
Sbjct: 19 RRNFMYQQKTKLIIAFLDILWDEGFILGYKIYSADSNILKIFLKYKNGNPVINSVKPISK 78
Query: 286 PRFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 432
P + + + W L S++ ++LTTS G+M E +R +GGK L
Sbjct: 79 PSQQIYYSVSQLWK--LDSKK-NLIILTTSKGLMTVNECKRAQIGGKPL 124
>UniRef50_Q06SG0 Cluster: Chloroplast 30S ribosomal protein S8; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S8 - Stigeoclonium helveticum (Green alga)
Length = 176
Score = 35.1 bits (77), Expect = 0.77
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEI 213
+ +SD L I NA K+ VLI P +K+ +K ++ K GYI FEI
Sbjct: 4 DTISDMLTRIRNASIVRKKSVLI-PYTKMNLKIAEILEKEGYILSFEI 50
>UniRef50_A6DRC4 Cluster: 30S ribosomal protein S8; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S8 - Lentisphaera araneosa HTCC2155
Length = 130
Score = 34.3 bits (75), Expect = 1.3
Identities = 32/130 (24%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVD-DHRAGKIVV 246
+ ++D L + NA + L P SKV +++ + GYI ++++V+ ++ + V
Sbjct: 3 DTIADFLTRLRNAGMANLAE-LNMPSSKVNASISSILKEEGYIADYDVVELENNKKDLKV 61
Query: 247 NLT---GR-----LNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEA 402
L G+ L + S R V ++I R L G V++TS G+M ++A
Sbjct: 62 QLKYHKGQPLIQGLKRVSKGSCRIFVKADEIPRVRGGL-----GIAVISTSKGMMTGQKA 116
Query: 403 RRKHLGGKIL 432
+ +++GG+++
Sbjct: 117 KSENIGGEVV 126
>UniRef50_Q9TAI6 Cluster: Ribosomal protein S8; n=1; Cafeteria
roenbergensis|Rep: Ribosomal protein S8 - Cafeteria
roenbergensis
Length = 131
Score = 34.3 bits (75), Expect = 1.3
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Frame = +1
Query: 67 MNVLSDALKSIHNAEKRGKRQVLIR-PCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 243
M +L+ + I A+K G + + I S + FL +++K G+I F + R V
Sbjct: 1 MILLNHLITVIKLAKKSGNKNIFIGIKASFLCYDFLRILLKQGFIKNFREIKQKRKEGYV 60
Query: 244 VNLTGRLNKCGVISPRFDVPINDIERWTNLLP----SRQFGYLVLTTSGGIMDHEEARRK 411
+ +I V N + + + G +L T G++ EAR
Sbjct: 61 IEFRFDERGNNIIKNIQFVASNQVFSTVKISALWKKEKGQGLFILLTPQGLLTDIEARNS 120
Query: 412 HLGGKIL 432
++GGK++
Sbjct: 121 NVGGKLV 127
>UniRef50_Q9HWE9 Cluster: 30S ribosomal protein S8; n=46;
Bacteria|Rep: 30S ribosomal protein S8 - Pseudomonas
aeruginosa
Length = 130
Score = 34.3 bits (75), Expect = 1.3
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M + L+D L I NA+ ++ V+ P SK+ V+ GYI +F+I + + +
Sbjct: 1 MSMQDPLADMLTRIRNAQM-AEKTVVSMPSSKLKAAVAKVLKDEGYIADFQISSEVKP-Q 58
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERWTNL--LPSRQ--FGYLVLTTSGGIMDHEEAR 405
+ + L K VI + + ++ ++ LP + G +++T+ G+M AR
Sbjct: 59 LSIELKYFEGK-PVIEEVKRISRPGLRQYKSVEQLPKVRGGLGVSIVSTNKGVMTDRAAR 117
Query: 406 RKHLGGKIL 432
+GG++L
Sbjct: 118 AAGVGGEVL 126
>UniRef50_A7PGU8 Cluster: Chromosome chr17 scaffold_16, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_16, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 93
Score = 33.9 bits (74), Expect = 1.8
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1
Query: 352 GYLVLTTSGGIMDHEEARRKHLGGKIL 432
G ++L+TS GIM EAR K +GG+IL
Sbjct: 2 GIVILSTSRGIMTDREARLKRIGGEIL 28
>UniRef50_P73307 Cluster: 30S ribosomal protein S8; n=9; cellular
organisms|Rep: 30S ribosomal protein S8 - Synechocystis
sp. (strain PCC 6803)
Length = 133
Score = 33.9 bits (74), Expect = 1.8
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNA--EKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRA 231
M + +SD L I NA + QV P +K+ + V+ G+I ++ +
Sbjct: 1 MASTDTISDMLTRIRNACAVRHSTTQV---PTTKMTLSIAKVLKSEGFIEDYSETGEGIN 57
Query: 232 GKIVVNLT--GRLNKCGVIS-PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHE 396
+V+ L G+ + + + R P + + +P G +++TS GIM
Sbjct: 58 KMLVLTLKYKGKTRQPLINTLQRVSKPGLRVYSPSKKIPRVLGGIGIAIVSTSHGIMTDR 117
Query: 397 EARRKHLGGKILGFFF 444
EARR+ +GG+IL + +
Sbjct: 118 EARRQGIGGEILCYIW 133
>UniRef50_O21254 Cluster: Ribosomal protein S8; n=1; Reclinomonas
americana|Rep: Ribosomal protein S8 - Reclinomonas
americana
Length = 128
Score = 33.5 bits (73), Expect = 2.4
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Frame = +1
Query: 58 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
M ++ + + +I +K V I SK+ L V+ + GYI +FE + +
Sbjct: 1 MTQIQSIQSLMSNIKQGQKNNLLSVDII-YSKLNFDILNVLYEEGYIRDFEKKTNKKNQD 59
Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYL--VLTTSGGIMDHEEARRK 411
I+ N I V I LL G + +L+TS GI +EA+R
Sbjct: 60 IINVRLKYYNNTSAIKNIQRVINQHIS--LKLLNQIDLGLVTYILSTSKGIFSGKEAKRL 117
Query: 412 HLGGKIL 432
+LGG +L
Sbjct: 118 NLGGTVL 124
>UniRef50_Q6D8U4 Cluster: Putative uncharacterized protein; n=1;
Pectobacterium atrosepticum|Rep: Putative
uncharacterized protein - Erwinia carotovora subsp.
atroseptica (Pectobacterium atrosepticum)
Length = 860
Score = 33.1 bits (72), Expect = 3.1
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -3
Query: 133 GLVFSLAFQHYV*ILRRHSIRSYAPWLRFSSRFVANRID 17
G + SLA Y H SY W RFSS FV+N ID
Sbjct: 347 GKMTSLAGYQYTEDKTEHEADSYQTWRRFSSGFVSNVID 385
>UniRef50_A2WMK5 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 186
Score = 33.1 bits (72), Expect = 3.1
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +1
Query: 253 TGRLNKCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 432
T ++ C +++P D IN + + +L +GY+V+TT G++DHEE G +L
Sbjct: 134 TWQIYFCNMLAPSLD--INLMLYYLSL--HSVWGYVVITTPNGVLDHEE-------GPLL 182
Query: 433 GFF 441
G+F
Sbjct: 183 GYF 185
>UniRef50_Q76YD0 Cluster: Putative uncharacterized protein; n=1;
Aeromonas phage Aeh1|Rep: Putative uncharacterized
protein - Aeromonas phage Aeh1
Length = 85
Score = 33.1 bits (72), Expect = 3.1
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 61 VRMN-VLSDALKSIHNAEKRGKRQVLIRP-CSKVIVKFLTVMMKHGYIGEFEIVDDHRA 231
+RMN ++++ K I +A +GKR + S + + + + KHGY EF + DHR+
Sbjct: 17 LRMNDLINNISKRIESASVQGKRVTYVYDVASDIRSEVINEITKHGYEVEFVVETDHRS 75
>UniRef50_Q7NEG6 Cluster: 30S ribosomal protein S8; n=165;
Bacteria|Rep: 30S ribosomal protein S8 - Gloeobacter
violaceus
Length = 133
Score = 32.3 bits (70), Expect = 5.4
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Frame = +1
Query: 70 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 249
+ L+D L I NA K ++ P +++ V+ G I E++ + + ++++
Sbjct: 5 DTLADMLTRIRNASIV-KHDIVPVPSTRMTRSVAEVLKMEGLILEYQDQGEGKDRQLLLT 63
Query: 250 L--TGRLNKCGVIS-PRFDVPINDIERWTNLLPS--RQFGYLVLTTSGGIMDHEEARRKH 414
L GR + + + R P + LP G +++TS G+M +ARR
Sbjct: 64 LKYAGRQRRPLITNLKRVSRPGLRVYANRKELPRVLGGIGIAIISTSQGVMTDRDARRAG 123
Query: 415 LGGKILGFFF 444
+GG++L + F
Sbjct: 124 VGGEVLCYVF 133
>UniRef50_P59031 Cluster: 30S ribosomal protein S8; n=8;
Chlorobiaceae|Rep: 30S ribosomal protein S8 - Chlorobium
tepidum
Length = 131
Score = 32.3 bits (70), Expect = 5.4
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Frame = +1
Query: 76 LSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLT 255
++D + I NA K + P ++V ++++ GYI + ++ + I V L
Sbjct: 7 IADFITRIRNAGS-AKNKTTDIPYTRVRENLSKLLLEKGYIKNYTVITSEQFPFIRVELK 65
Query: 256 GRLNKCGVISP--RFDVPINDIERWTNLLPSRQ-FGYLVLTTSGGIMDHEEARRKHLGGK 426
+ I R P + + ++ G +L+TS GI+ +EAR +++GG+
Sbjct: 66 YMQDGQHAIKEISRVSKPGRRVYQGKDIKRYLGGLGLFILSTSKGILTDKEAREQNVGGE 125
Query: 427 IL 432
+L
Sbjct: 126 VL 127
>UniRef50_Q73NX9 Cluster: ISTde2, transposase; n=4; Bacteria|Rep:
ISTde2, transposase - Treponema denticola
Length = 358
Score = 31.9 bits (69), Expect = 7.2
Identities = 22/71 (30%), Positives = 29/71 (40%)
Frame = +1
Query: 145 CSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERW 324
C K K T H Y +E + A K++ + K IS D+ I +E W
Sbjct: 284 CLKEGEKRTTCYYAHPY-SSWERGSNENANKLIRRF---IPKGADISKYSDIQIKQVENW 339
Query: 325 TNLLPSRQFGY 357
N P R FGY
Sbjct: 340 INNYPRRMFGY 350
>UniRef50_O67566 Cluster: 30S ribosomal protein S8; n=2;
Aquifex|Rep: 30S ribosomal protein S8 - Aquifex aeolicus
Length = 168
Score = 31.9 bits (69), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 343 RQFGYLVLTTSGGIMDHEEARRKHLGGKILGF 438
R G +++T G+M EARR GG+++ F
Sbjct: 135 RGLGIAIVSTDAGVMTDHEARRMRKGGEVIAF 166
>UniRef50_A6GH34 Cluster: Rieske (2Fe-2S) region; n=1; Plesiocystis
pacifica SIR-1|Rep: Rieske (2Fe-2S) region -
Plesiocystis pacifica SIR-1
Length = 578
Score = 31.5 bits (68), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 226 RAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 327
R G I + G+ N+ G ++P FD+P + E WT
Sbjct: 125 RNGLIYIYYAGKGNEHGEVTPAFDIPELETEGWT 158
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,162,482
Number of Sequences: 1657284
Number of extensions: 7804407
Number of successful extensions: 16820
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 16513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16795
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -