Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p18f
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    31   0.10 
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   1.3  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   2.9  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   5.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   5.1  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   6.7  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   8.9  

>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -3

Query: 137 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 33
           I   +MR ELG   T RC   D QA    K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 480 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 367
           EG     LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 507 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 388
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -2

Query: 477 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 373
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = -2

Query: 489 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 322
           VV E D   +LS   LK  ++G      +AEN     S T    NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 189 ERISRSQQFTDFIEQV*DHDVKDA 118
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 510 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 385
           SDV D +V+ E   +  +SN V + K  S  E   D A++  F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 113 ELGSKSTSRCGTADTQ 66
           EL  KST  CGT D Q
Sbjct: 53  ELNPKSTDNCGTVDFQ 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,903
Number of Sequences: 5004
Number of extensions: 31662
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)