Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p17f
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0575 + 4601904-4602458 29 1.8
04_01_0382 - 5076673-5077774,5078122-5078186 29 1.8
02_02_0282 - 8540726-8541106 29 1.8
11_01_0591 - 4694710-4695270 29 3.2
11_01_0587 - 4662277-4662837 29 3.2
03_03_0093 + 14377054-14377635 29 3.2
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 27 9.9
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40... 27 9.9
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 27 9.9
>11_01_0575 + 4601904-4602458
Length = 184
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -2
Query: 285 PRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEVILPI-LKALDLSVD-LGS 112
P R A T P +YL A + A + TKL ++ + + P+ L+ SVD L +
Sbjct: 50 PEARKATTVGPLAELYLRAIANQTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSN 109
Query: 111 ATSLVDTATIAVNTNNR 61
A + +A+ VN R
Sbjct: 110 ALAAFFSASADVNKKYR 126
>04_01_0382 - 5076673-5077774,5078122-5078186
Length = 388
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 339 KVKPTPPPVRRTLANCVDPRTRTALTRLP 253
K PTPPP RR N +D R + RLP
Sbjct: 256 KKLPTPPPKRRLGINMLDGRNKLVEYRLP 284
>02_02_0282 - 8540726-8541106
Length = 126
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 317 GGGVGFTFVNLQFVNAPRRGFSFTVQ 394
GGGV TF+ QFV + GF VQ
Sbjct: 12 GGGVKVTFIETQFVTSDAAGFKSLVQ 37
>11_01_0591 - 4694710-4695270
Length = 186
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 285 PRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEVILPI-LKALDLSVD-LGS 112
P R A T P +YL A A + TKL ++ + + P+ L+ SVD L +
Sbjct: 52 PEARKATTVGPLAELYLQAIANHTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSN 111
Query: 111 ATSLVDTATIAVNTNNR 61
A + +A+ VN R
Sbjct: 112 ALAAFFSASADVNKKYR 128
>11_01_0587 - 4662277-4662837
Length = 186
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 285 PRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEVILPI-LKALDLSVD-LGS 112
P R A T P +YL A A + TKL ++ + + P+ L+ SVD L +
Sbjct: 52 PEARKATTVGPLAELYLQAIANHTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSN 111
Query: 111 ATSLVDTATIAVNTNNR 61
A + +A+ VN R
Sbjct: 112 ALAAFFSASADVNKKYR 128
>03_03_0093 + 14377054-14377635
Length = 193
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 413 AYSGRLHAKTRSFCFFVCTKNSFSPFFLINDSRIYY 520
AYS L A + C C +SF+ ++ +D R+YY
Sbjct: 50 AYSRVLSAALLALCGAFCAFSSFTDSYVGSDGRVYY 85
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 342 TKVKPTPPPVRRTLANCVDPRTRT 271
T VKPTP P R+ A P+T T
Sbjct: 78 TPVKPTPTPKRKRAAPSPSPKTPT 101
>06_01_0041 +
403634-403817,404154-404332,404431-404536,404620-404936,
405231-405605,406199-406283,406570-408066,408575-408738
Length = 968
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 119 RSTDRSNALSIG-SITSSDRLLRSFVVSRAATTNSRAVNVRYTAP 250
+STD + S G I SSDR S V S + VN TAP
Sbjct: 557 KSTDNKGSSSFGLHIGSSDRSHNSDVTSNGGVSGIAPVNKAETAP 601
>01_07_0359 -
43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 345 FTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGA 244
F+ + P P+RR +A+C+ P T P A
Sbjct: 32 FSSARKPPEPLRRAVADCLSPPAPHTHTHAPPPA 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,211,716
Number of Sequences: 37544
Number of extensions: 221068
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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