Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p16r
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 101 1e-22
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 77 2e-15
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 70 4e-13
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 69 5e-13
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 57 2e-09
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 56 7e-09
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 53 5e-08
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 49 8e-07
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 45 1e-05
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 31 0.23
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 29 0.70
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 27 2.1
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 4.9
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 26 4.9
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 4.9
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 6.5
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 101 bits (241), Expect = 1e-22
Identities = 42/97 (43%), Positives = 63/97 (64%)
Frame = -2
Query: 694 FENLKRLIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEF 515
F L+ L ++Q H S+WPFM+PV + P YY++I+ PMDL T+E ++ Y + EF
Sbjct: 349 FAVLEMLFTEMQNHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEF 408
Query: 514 IGDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIK 404
I D IFDNCR +N ++ +Y+ AD LE FF +K++
Sbjct: 409 IRDAKYIFDNCRSYNDSNTTYYKNADRLEKFFQKKLR 445
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 77.4 bits (182), Expect = 2e-15
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Frame = -2
Query: 685 LKRLIKQIQLHKSAWPFMEPVDPR--EAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFI 512
LK L K+ Q A+PF +PVDP + P Y+ +IKEPMDL T++ K+N+ YS L EF
Sbjct: 264 LKELYKR-QYESFAFPFYQPVDPVACDCPDYFDVIKEPMDLSTIQSKLNKNEYSTLEEFE 322
Query: 511 GDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQK 410
D+ +F+NC +NP + + LE F +K
Sbjct: 323 SDILLMFNNCFTYNPPGTPVHVMGRQLENVFKEK 356
Score = 71.7 bits (168), Expect = 1e-13
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDP--REAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDM 503
+++Q++ K++ PF PVDP + P Y I+K PMDL T+E+K+ YS+ EFI DM
Sbjct: 96 IVRQLKRTKNSAPFKVPVDPIKQNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQEFIDDM 155
Query: 502 TKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIK 404
+F NC +N +S L+ F +++K
Sbjct: 156 NLMFSNCFLYNGTESPVGSMGKALQEVFERQLK 188
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 69.7 bits (163), Expect = 4e-13
Identities = 30/85 (35%), Positives = 50/85 (58%)
Frame = -2
Query: 640 PFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTKIFDNCRYFNPKD 461
PF DPR P YY+ I++PM L+ +++K+++ Y + +F+ D +FDN + FN
Sbjct: 236 PFERLPDPRMFPEYYQAIEQPMALEVIQKKLSKHRYETIEQFVDDFNLMFDNAKSFNDPS 295
Query: 460 SEFYRCADGLEAFFAQKIKYFREKL 386
S+ YR AD L+ + A ++ KL
Sbjct: 296 SQVYRDADFLKNYLADVLRLEAGKL 320
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 69.3 bits (162), Expect = 5e-13
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Frame = -2
Query: 685 LKRLIKQIQLHKSAWPFMEPVDPREA--PTYYKIIKEPMDLQTVERKVNEQTYSMLSEFI 512
LK L+K+ Q A+PF +PV+P P Y+K+IK PMDL T++ K+N Y+ + F
Sbjct: 401 LKELLKK-QHEAYAYPFYKPVNPTACGCPDYFKVIKHPMDLGTMQNKLNHNEYASMKAFE 459
Query: 511 GDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQKI 407
DM +F NC FN + + LE+ F QK+
Sbjct: 460 ADMVLMFKNCYKFNSAGTPVHLMGKKLESIF-QKL 493
Score = 67.3 bits (157), Expect = 2e-12
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Frame = -2
Query: 709 LTHKDFENLKRLIKQIQLHKSAWPFMEPVDP--REAPTYYKIIKEPMDLQTVERKVNEQT 536
+T + + + +++Q++ + + PF PVDP + P Y IIK P+DL T+++K +
Sbjct: 230 MTKEQHKYIHAMLRQLRRGRDSIPFRAPVDPVKQNIPDYPTIIKNPIDLGTMQKKFSSGV 289
Query: 535 YSMLSEFIGDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIK 404
YS FI DM +F NC +N +S L+A F +++K
Sbjct: 290 YSSAQHFIDDMNLMFSNCFLYNGTESPVGVMGKNLQATFERQLK 333
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = -2
Query: 694 FENLKRLIKQIQLH-KSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSE 518
+E ++++ +++ + + + F+ V R+AP YY +IKEPMDL T+ R + Y+ E
Sbjct: 304 YEAAEKVVLELRSYTEHSLAFLTKVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKE 363
Query: 517 FIGDMTKIFDNCRYFN 470
F+ D+ I+ NC +N
Sbjct: 364 FVHDLMLIWSNCFLYN 379
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 55.6 bits (128), Expect = 7e-09
Identities = 22/72 (30%), Positives = 41/72 (56%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTK 497
++ I H+ PF PV+ +EAP Y ++ +P DL+T++ + E + + E ++ +
Sbjct: 197 MLDNISNHRFGAPFSHPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELYREVLR 256
Query: 496 IFDNCRYFNPKD 461
IF NC+ +N D
Sbjct: 257 IFANCKMYNGSD 268
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 52.8 bits (121), Expect = 5e-08
Identities = 25/83 (30%), Positives = 44/83 (53%)
Frame = -2
Query: 637 FMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTKIFDNCRYFNPKDS 458
F++ R P YY+IIK PM ++ +E++ + Y+ L F+ D+ ++F N + +N S
Sbjct: 170 FIDLPSKRLYPDYYEIIKSPMTIKMLEKRFKKGEYTTLESFVKDLNQMFINAKTYNAPGS 229
Query: 457 EFYRCADGLEAFFAQKIKYFREK 389
Y A+ L + I F E+
Sbjct: 230 FVYEDAEKLSQLSSSLISSFSEQ 252
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -2
Query: 637 FMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTKIFDNCRYFNPKDS 458
F E R P YY+II++P+ + + K Y + +F D+ + N + +N S
Sbjct: 37 FEELPSKRYFPDYYQIIQKPICYKMMRNKAKTGKYLSMGDFYDDIRLMVSNAQTYNMPGS 96
Query: 457 EFYRCA 440
Y C+
Sbjct: 97 LVYECS 102
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = -2
Query: 637 FMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTKIFDNCRYFNPKDS 458
F+E + P YY IIK P+ L + + +N Y L D+ +F+N R +N + S
Sbjct: 1092 FLELPSKKLYPDYYMIIKSPIALDAIRKHINGTFYKTLEAMKSDLMTMFNNARTYNEEGS 1151
Query: 457 EFYRCADGLEAFFAQKIKYFRE 392
Y A+ ++ KI+ E
Sbjct: 1152 FVYEDANKMQTAMETKIEELEE 1173
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = -2
Query: 637 FMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTKIFDNCRYFNPKDS 458
F+ P + + P YY IIK P+ L ++R + Y + E I D +F+N +N + S
Sbjct: 1544 FLYPPNRKLYPDYYIIIKRPIALGKIKRNIKNDRYGDVGELIADFMLMFNNAYTYNEEHS 1603
Query: 457 EFYRCADGLEAFFAQKIK 404
Y A +E + I+
Sbjct: 1604 IVYEDAKLMEKTLKEVIE 1621
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 30.7 bits (66), Expect = 0.23
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 117 HKSVSFLRRIEACNNYNKYL*T*LTYSCR*LFIILCKFHH-ILYNLQADHFKKQRVNF-V 290
HKSV F++ + + Y+ +I C F + I YN + KK NF
Sbjct: 16 HKSVEFIQSRDDNACFGSYIAVAQNDIAPDQLLISCPFEYAITYNKAKEELKKLNPNFES 75
Query: 291 CSPQVCTVCAHYALK 335
C+P + T+C AL+
Sbjct: 76 CNPHI-TLCTFLALE 89
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 29.1 bits (62), Expect = 0.70
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 429 SNPSAHR*NSESFGLKYRQLSNILVISPINSLNILYVCSFTFRSTVCKSIGS 584
+NPS NS F +K ++ +PI LN+L +C T++ K G+
Sbjct: 61 NNPSRSTDNSSPFLIKL-----LISFTPIYVLNVLAICYLTYKDAFFKDYGA 107
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 417 AKNASNPSAHR*NSESFGLKYRQ--LSNILV-ISPINSLNILYVCSFTFRSTVCKSIGS 584
A+ +++P+ HR N+ S L +L+ +PI LN+L +C ++ K+ G+
Sbjct: 49 ARVSNSPNTHRENNPSRSTDNSSPFLIKLLISFTPIYVLNVLAICYLKYKDAFFKNYGA 107
>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 468 GLKYRQLSNILVISPINSLNILYVCSFTFRST 563
GL+ +Q+ N L I I S L +C F F T
Sbjct: 12 GLRSKQMINFLCIQNILSARTLKICRFRFLPT 43
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -2
Query: 586 KEPMDLQTVERKVNEQTY--SMLSEFI 512
KEP +T+E+ N QTY S++ EF+
Sbjct: 388 KEPSAFETLEKSSNVQTYKPSLMPEFL 414
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 679 RLIKQIQLHKSAWPFMEPVDPREAPTYYKII-KEPMDLQTVERKVNEQTYSMLSEFIGD 506
R IK+++L+ A F+ + P K ++P + V K+N Q M+ F+G+
Sbjct: 407 REIKEVELY--AKEFISGIQQASYPEAAKHYGRDPKQMGVVVEKLNSQCLEMVYSFVGE 463
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 541 QTYSMLSEFIGDMTKIFDNCRYFNPKD--SEFY 449
Q++S +S I +TKI+DN F+PK+ S FY
Sbjct: 677 QSFSHISR-IQFLTKIWDNLNRFSPKEKTSTFY 708
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 179 DITDILLQVIIYNSL*ISSHSLQFTGRSF*ETASQFCLQSSSLHSLCTLCPKII 340
DI D L+ + + + + + +L++ R + C +SL +LC+LC +I
Sbjct: 432 DIMDETLEFLKHKNPQVKTETLRWLNRCL--QLTDVCPPRASLETLCSLCVTLI 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,865
Number of Sequences: 5004
Number of extensions: 58488
Number of successful extensions: 174
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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