Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p16r
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly... 100 1e-21
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 76 2e-14
At2g34900.2 68415.m04284 DNA-binding bromodomain-containing prot... 75 4e-14
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot... 75 4e-14
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 74 9e-14
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot... 72 5e-13
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 69 4e-12
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot... 68 6e-12
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 64 9e-11
At5g55040.1 68418.m06859 DNA-binding bromodomain-containing prot... 62 3e-10
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot... 62 3e-10
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot... 62 5e-10
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 62 5e-10
At3g52280.1 68416.m05746 DNA-binding bromodomain-containing prot... 61 7e-10
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 60 1e-09
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 60 2e-09
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 59 3e-09
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 59 3e-09
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 58 8e-09
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 54 1e-07
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 50 2e-06
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 48 5e-06
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 46 3e-05
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 41 7e-04
At1g20530.1 68414.m02558 hypothetical protein 31 0.80
At3g55100.1 68416.m06119 ABC transporter family protein ATP-bind... 29 2.4
At5g06930.1 68418.m00783 expressed protein 29 3.2
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 29 3.2
At2g15260.1 68415.m01740 zinc finger (C3HC4-type RING finger) fa... 28 5.7
At5g13580.1 68418.m01570 ABC transporter family protein 27 9.9
At1g55200.1 68414.m06305 protein kinase family protein contains ... 27 9.9
>At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly
identical to histone acetyltransferase GCN5 [Arabidopsis
thaliana] GI:13591696; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00439: Bromodomain
Length = 568
Score = 100 bits (239), Expect = 1e-21
Identities = 42/95 (44%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Frame = -2
Query: 685 LKRLIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKV-NEQTYSMLSEFIG 509
++ L+K +Q H AWPF EPVD R+ P YY IIK+P+DL+ + ++V +EQ Y L F+
Sbjct: 464 MRALLKTMQDHADAWPFKEPVDSRDVPDYYDIIKDPIDLKVIAKRVESEQYYVTLDMFVA 523
Query: 508 DMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIK 404
D ++F+NCR +N D+ +Y+CA LE F K++
Sbjct: 524 DARRMFNNCRTYNSPDTIYYKCATRLETHFHSKVQ 558
>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 620
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVD--PREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDM 503
L+K++ + W F PVD P Y+ IIK PMDL TV+ K+ TYS SEF D+
Sbjct: 136 LLKRLMSQQHCWLFNTPVDVVKLNIPDYFTIIKHPMDLGTVKSKLTSGTYSSPSEFSADV 195
Query: 502 TKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFREK 389
F N +NP D+ YR AD L FF + K +K
Sbjct: 196 RLTFRNAMTYNPSDNNVYRFADTLSKFFEVRWKTIEKK 233
>At2g34900.2 68415.m04284 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 276
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDPREAPT--YYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDM 503
+ +QI HK AWPF+EPVD + YYK+I++PMDL T+++K+ YS + E D+
Sbjct: 7 MFRQIAQHKWAWPFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYADV 66
Query: 502 TKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFREKLFE 380
+F N +N + + Y A+ L F +K KL E
Sbjct: 67 RLVFKNAMRYNEEKEDVYVMAESLLEKFEEKWLLIMPKLVE 107
>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 386
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDPREAPT--YYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDM 503
+ +QI HK AWPF+EPVD + YYK+I++PMDL T+++K+ YS + E D+
Sbjct: 117 MFRQIAQHKWAWPFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYADV 176
Query: 502 TKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFREKLFE 380
+F N +N + + Y A+ L F +K KL E
Sbjct: 177 RLVFKNAMRYNEEKEDVYVMAESLLEKFEEKWLLIMPKLVE 217
>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 477
Score = 74.1 bits (174), Expect = 9e-14
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDP--REAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDM 503
L+ ++ HKS WPF PVDP P Y+ +IK PMDL T+ ++ + YS +F D+
Sbjct: 168 LLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYSSPLDFAADV 227
Query: 502 TKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFREKL 386
F N +NP ++F+ A G+ +F K +K+
Sbjct: 228 RLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIEKKI 266
>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 688
Score = 71.7 bits (168), Expect = 5e-13
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDPREAPT--YYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDM 503
L+K++ H+ W F PVD + Y+ +I+ PMDL TV+ K+ TYS SEF D+
Sbjct: 144 LLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKLTSGTYSCPSEFAADV 203
Query: 502 TKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFREKL 386
F N +NP ++ Y AD L FF + K +KL
Sbjct: 204 RLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLEKKL 242
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 68.5 bits (160), Expect = 4e-12
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = -2
Query: 694 FENLKRLIKQIQLHKSAWPFMEPVDPREAPT--YYKIIKEPMDLQTVERKVNEQTYSMLS 521
F+N L+ ++ HKSAW F PVD + Y+ I+KEPMDL TV+ K+ + Y
Sbjct: 133 FKNCNSLLTKLMKHKSAWVFNVPVDAKGLGLHDYHNIVKEPMDLGTVKTKLGKSLYKSPL 192
Query: 520 EFIGDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQK 410
+F D+ F+N +NP + YR A+ L F K
Sbjct: 193 DFAEDVRLTFNNAILYNPIGHDVYRFAELLLNMFEDK 229
>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 494
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDP--REAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDM 503
L++ + H+ W F EPVDP E P Y+ +I++PMDL TV+ K+ + YS EF D+
Sbjct: 76 LLRFLMEHRGGWLFKEPVDPVKMEIPDYFNVIQKPMDLGTVKSKLLKNVYSNADEFAADV 135
Query: 502 TKIFDNCRYFNPKDSEFYRCADGLEAFF 419
F N ++NP +E + A + F
Sbjct: 136 RLTFANAMHYNPLWNEVHTIAKEINEIF 163
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 64.1 bits (149), Expect = 9e-11
Identities = 29/95 (30%), Positives = 51/95 (53%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTK 497
++ ++Q + + +PVDP E P Y++IIK PMD T+ K++ YS L +F D+
Sbjct: 183 ILDRLQKKDTYGVYSDPVDPEELPDYFEIIKNPMDFSTLRNKLDSGAYSTLEQFERDVFL 242
Query: 496 IFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFRE 392
I N +N D+ +YR A ++ + + R+
Sbjct: 243 ICTNAMEYNSADTVYYRQARAIQELAKKDFENLRQ 277
>At5g55040.1 68418.m06859 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 145
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = -2
Query: 697 DFENLKRLIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSE 518
D ++L+ ++ ++Q + EPVDP E P Y+ +I+ PMD TV +K+ +YS L E
Sbjct: 47 DKKSLELILDKLQKKDIYGVYAEPVDPEELPDYHDMIEHPMDFSTVRKKLANGSYSTLEE 106
Query: 517 FIGDMTKIFDNCRYFNPKDSEFYR 446
D+ I N +N D+ +Y+
Sbjct: 107 LESDVLLICSNAMQYNSSDTVYYK 130
>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 461
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = -2
Query: 691 ENLKRLIKQIQLHKSAWPFMEPVD--PREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSE 518
++ L+ ++ HKS W F PVD Y+ IIKEPMDL TV+ ++++ Y E
Sbjct: 121 KSCNNLLTKLMKHKSGWIFNTPVDVVTLGLHDYHNIIKEPMDLGTVKTRLSKSLYKSPLE 180
Query: 517 FIGDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQK 410
F D+ F+N +NP + Y A+ L F +K
Sbjct: 181 FAEDVRLTFNNAMLYNPVGHDVYHMAEILLNLFEEK 216
>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 580
Score = 61.7 bits (143), Expect = 5e-10
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTK 497
++ ++Q + + +P DP E P YY+IIK PMD T+ +K+ Y+ L +F D+
Sbjct: 153 ILDRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQDVFL 212
Query: 496 IFDNCRYFNPKDSEFYRCA 440
I N +N D+ +YR A
Sbjct: 213 ICTNAMEYNSADTVYYRQA 231
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 61.7 bits (143), Expect = 5e-10
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTK 497
++ ++Q + + +P DP E P YY+IIK PMD T+ +K+ Y+ L +F D+
Sbjct: 152 ILDRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQDVFL 211
Query: 496 IFDNCRYFNPKDSEFYRCA 440
I N +N D+ +YR A
Sbjct: 212 ICTNAMEYNSADTVYYRQA 230
>At3g52280.1 68416.m05746 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 369
Score = 61.3 bits (142), Expect = 7e-10
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDPR--EAPTYYKIIKEPMDLQTVERKVNEQT---YSMLSEFI 512
+ +QI HK AWPFM PV+ Y+++I +PMD T++ ++ + Y + +
Sbjct: 101 IFRQITQHKCAWPFMHPVNVEGLGLHDYFEVIDKPMDFSTIKNQMEAKDGTGYKHVMQIY 160
Query: 511 GDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFREKLFE 380
DM +F+N +N + S+ Y A L F +K +F K+ E
Sbjct: 161 ADMRLVFENAMNYNEETSDVYSMAKKLLEKFEEKWAHFLPKVQE 204
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/79 (32%), Positives = 44/79 (55%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTK 497
++ ++Q + + +P DP E P YY+IIK PMD T+ +K+ Y+ L +F ++
Sbjct: 152 ILDRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEANVFL 211
Query: 496 IFDNCRYFNPKDSEFYRCA 440
I N +N D+ +YR A
Sbjct: 212 ICTNAMEYNSADTVYYRQA 230
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -2
Query: 676 LIKQIQLHKSAWPFMEPVD--PREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDM 503
L++++ H +W F PVD P Y IK PMDL TV++ + YS EF D+
Sbjct: 183 LLRKLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKKNLASGVYSSPHEFAADV 242
Query: 502 TKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFREKL 386
F N +NP + + D L F + K ++KL
Sbjct: 243 RLTFTNAMTYNPPGHDVHIMGDILSKLFEARWKTIKKKL 281
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = -2
Query: 700 KDFENLKRLIKQIQLHKSAWPFMEPVDPREAPT--YYKIIKEPMDLQTVERKVNEQTYSM 527
K F+N L++++ HK W F PVD + YY II+ PMDL T++ + + Y
Sbjct: 420 KVFKNCSALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKS 479
Query: 526 LSEFIGDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQK 410
EF D+ F N +NP+ + + A L F ++
Sbjct: 480 PREFAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEER 518
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = -2
Query: 700 KDFENLKRLIKQIQLHKSAWPFMEPVDPREAPT--YYKIIKEPMDLQTVERKVNEQTYSM 527
K F+N L++++ HK W F PVD + YY II+ PMDL T++ + + Y
Sbjct: 420 KVFKNCSALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKS 479
Query: 526 LSEFIGDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQK 410
EF D+ F N +NP+ + + A L F ++
Sbjct: 480 PREFAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEER 518
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 57.6 bits (133), Expect = 8e-09
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = -2
Query: 679 RLIKQIQLHKSAWPFMEPVDP--REAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGD 506
+++ ++ HK AW F PVD Y++++K+PMDL TV+ +++ Y +F D
Sbjct: 175 QILVKLMKHKWAWVFNTPVDVVGLGLHDYHQVVKKPMDLGTVKLNLDKGFYVSPIDFATD 234
Query: 505 MTKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFREKLFEANQ 371
+ FDN +NPK + Y AD L F +K FEA Q
Sbjct: 235 VRLTFDNAMTYNPKGQDVYFMADKLLDHFDGMFNPAFKK-FEAQQ 278
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = -2
Query: 679 RLIKQIQLHKSAWPFMEPVDP--REAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGD 506
+++ ++ HK +W F+ PVD Y++I+ +PMDL TV+ + + Y +F D
Sbjct: 255 QILVKLMKHKWSWVFLNPVDVVGLGLHDYHRIVDKPMDLGTVKMNLEKGLYRSPIDFASD 314
Query: 505 MTKIFDNCRYFNPKDSEFYRCADGLEAFF 419
+ F N +NPK + Y A+ L + F
Sbjct: 315 VRLTFTNAMSYNPKGQDVYLMAEKLLSQF 343
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = -2
Query: 637 FMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTKIFDNCRYFNP-KD 461
F++PV +EAP Y +I+K PMDL T+ KV Y +F D+ +I N +N ++
Sbjct: 1601 FLKPVTKKEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYNDGRN 1660
Query: 460 SEFYRCADGLEAFFAQKIKYFREKLFEANQ 371
AD L + + +R++L EA +
Sbjct: 1661 LSIPPLADELLVKCDRLLDEYRDELKEAEK 1690
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = -2
Query: 685 LKRLIKQIQLHKSAWP-FMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIG 509
L+R++ ++L + F++PV +EAP Y I++ PMDL T+ KV + Y +F
Sbjct: 1807 LERIVDTLRLKEEVSRLFLKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRH 1866
Query: 508 DMTKIFDNCRYFN 470
D+ +I N +N
Sbjct: 1867 DVWQIKYNAHLYN 1879
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = -2
Query: 700 KDFENLKRLIKQIQLHKSAWPFMEPVDPREA--PTYYKIIKEPMDLQTVERKVNEQTYSM 527
++ E+ +IK+I ++A PF PV+P P Y+ IIK PMD T+ + M
Sbjct: 214 QELEDSLIVIKKIMKMEAADPFNVPVNPEALGIPDYFDIIKTPMDFGTICNNFEKGNKYM 273
Query: 526 LSEFI-GDMTKIFDNCRYFNPK 464
SE + D+ I++NC +N K
Sbjct: 274 NSEDVYKDVNYIWNNCSKYNKK 295
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439: Bromodomain
Length = 1210
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = -2
Query: 685 LKRLIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGD 506
L+ + +I K F PV +AP Y II+ PMD T+ ++V+ Y + F+ D
Sbjct: 902 LRDVCNRILYDKRFSAFHFPVTDEDAPNYRSIIQIPMDTATLLQRVDTGQYLTCTPFLQD 961
Query: 505 MTKIFDNCRYFNPKD 461
+ I N + +N D
Sbjct: 962 VDLIVRNAKAYNGDD 976
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -2
Query: 616 REAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTKIFDNCRYFNPKDSEFYRC 443
+ AP K K DL V +++ E + SE D++K+FD R+ + S Y+C
Sbjct: 218 KRAPKESKDQKVSSDLSEVTKQLQEM-FKKASESGNDVSKMFDTSRFRYYQKSSVYQC 274
>At3g55100.1 68416.m06119 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 662
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 454 FYRCADGLEAFFAQKIKYFREKLFEA 377
FY CADGL AF ++ + RE A
Sbjct: 419 FYSCADGLPAFIQERYIFLRETAHNA 444
>At5g06930.1 68418.m00783 expressed protein
Length = 657
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 673 IKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSE 518
+K HK+ + E V+ +P YY +IK + + + Y +L E
Sbjct: 605 LKLSMTHKNGYSSNEKVETPRSPPYYNVIKGAVAKDNLNLSETNERYRLLGE 656
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -2
Query: 631 EPVDPREAPTYYKIIKEPMDLQTVERKVNEQT---YSMLSEFIGDMT-KIFDNCRYFNPK 464
+PVD R+A +++ ++P +Q +ERKV + M S + T KIF N
Sbjct: 73 KPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTT 132
Query: 463 DSEF 452
+ EF
Sbjct: 133 EEEF 136
>At2g15260.1 68415.m01740 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 362
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = -2
Query: 634 MEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTKIFDNCRYFNPKDSE 455
+EPVD + +E D K N + + + + I D + D + +PKDS+
Sbjct: 56 VEPVDEENRDALNPVDEENHDSMNHVAKQNHDSSNHVDQEIRDSQNLIDEENHDSPKDSD 115
Query: 454 F 452
+
Sbjct: 116 Y 116
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 727
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 454 FYRCADGLEAFFAQKIKYFREKLFEA 377
FY CAD L F ++ + RE + A
Sbjct: 484 FYTCADALPVFLQERFIFMRETAYNA 509
>At1g55200.1 68414.m06305 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 676
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 294 SPQVCTVCAHYALK*FFVTSRFHSYH--*LASNSFSR 398
SP +C++C H A F RF SY LA+N FSR
Sbjct: 346 SPPLCSICQHKA-PVFGKPPRFFSYKELELATNGFSR 381
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,962
Number of Sequences: 28952
Number of extensions: 270787
Number of successful extensions: 633
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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