Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p16f
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536...    33   0.16 
04_03_0825 - 20092781-20092801,20092844-20093079,20093166-200932...    31   0.65 
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450...    28   6.1  
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761...    28   6.1  

>11_06_0013 -
           19252779-19252805,19252947-19253090,19253572-19253663,
           19253757-19253835,19253965-19254031,19254163-19254254,
           19254986-19255102,19255254-19255365,19255479-19255594,
           19255680-19255756,19255912-19255993,19256077-19256214,
           19258806-19259009
          Length = 448

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 12/31 (38%), Positives = 24/31 (77%)
 Frame = +2

Query: 359 GHIVIHFMKHHKRLRT*QRWALDKLKCIITV 451
           GH+++HF KH++R++   RW++  L C++T+
Sbjct: 328 GHVIVHFKKHNERIK---RWSILSL-CLLTL 354


>04_03_0825 -
           20092781-20092801,20092844-20093079,20093166-20093244,
           20093344-20093482,20093533-20093624,20093714-20093830,
           20093930-20094041,20094154-20094260,20094351-20094427,
           20094517-20094598,20094702-20094839,20095495-20095608
          Length = 437

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 356 YGHIVIHFMKHHKRLRT*QRWALDKLKCII 445
           YGH+++HF KH +R+    +W +     +I
Sbjct: 318 YGHVIVHFQKHKERI---MKWLIPSFSMLI 344


>05_04_0254 -
           19444409-19444621,19444724-19444887,19444974-19445087,
           19446086-19446395
          Length = 266

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 540 APLPDIIELSIVHFPARAP*KHSFVYKNTITVIMHFSLSKA 418
           A LP ++ + + H+  + P  H+FVY    T+ + FS+  A
Sbjct: 98  AVLPFVLMVPLYHYQHKHP--HNFVYLGLFTLCLSFSIGVA 136


>05_03_0619 +
           16274255-16274396,16274775-16274848,16275111-16276139,
           16276484-16276702,16277228-16277250,16277482-16277606,
           16279480-16279670,16280202-16280360,16281359-16281598
          Length = 733

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
 Frame = -1

Query: 451 HGNNAFQFIQSPTLSCSEAFMMLHEMYHYMSVIGYCLQSFSQ*N-EMSTHSLN-ENQLEM 278
           HG+N    I S  LS  E   +L  +  + SV+GY LQ     N  + TH +  E +   
Sbjct: 319 HGDNEAPVIISGKLSEDETNRILVVLQKHRSVLGYSLQDLKGINPALCTHRIPIEPKSSP 378

Query: 277 YKFAQH-IENAMTR-----GLELIHAILKR*TPTSYW 185
            K  Q  + NAM        L+L+H  +    P S W
Sbjct: 379 SKEPQRWLNNAMREVVKKDVLKLLHTRIIYPVPYSEW 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,199
Number of Sequences: 37544
Number of extensions: 272169
Number of successful extensions: 465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)