Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p16f
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58180| Best HMM Match : zf-C2H2 (HMM E-Value=1e-24)                 27   8.2  
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                27   8.2  
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 27   8.2  
SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_58180| Best HMM Match : zf-C2H2 (HMM E-Value=1e-24)
          Length = 201

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 352 GYCLQSFSQ*NEMSTHSL 299
           GYC +SFS  NE+  HS+
Sbjct: 120 GYCSESFSNPNELRNHSI 137


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 487 TVKT*FCLQKHNHGNNAFQFIQSPTLSCSEAFMMLHEMYHYMSVIGYCLQSFS 329
           T +T  C+  +N  N  F+ I      CS  + + +    Y+  + YC   FS
Sbjct: 585 TKETTACVNVNNRSNGCFRSIDMCVEMCSGGYYVYYLRPPYVCSMAYCACRFS 637


>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +2

Query: 413 RWALDKLKCIITVIVFL*TKLCFHGARAGKCTIDSSIMSGRGAKKRG 553
           +W    L    T   F+ TK C  GA  G CT+D S   GR   KRG
Sbjct: 636 QWEQQGLCTNATYQAFMETK-C--GAACGLCTVDVSSCLGRHNTKRG 679


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 352  GYCLQSFSQ*NEMSTHSL 299
            GYC +SFS  NE+  HS+
Sbjct: 1133 GYCSESFSNPNELRNHSI 1150


>SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 472 FCLQKHNHGNNAFQFIQSPTLSCSEAFMMLH 380
           F  +K + GNN +  IQ P    SE F M H
Sbjct: 192 FSQKKLDVGNNKYILIQRPVFVLSEKFAMTH 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,231,361
Number of Sequences: 59808
Number of extensions: 340412
Number of successful extensions: 1230
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)