Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p16f
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-7|CAE11296.1|  221|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U29613-4|AAP82648.2|  165|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z81484-7|CAE11296.1|  221|Caenorhabditis elegans Hypothetical
           protein C47A10.7 protein.
          Length = 221

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 9   ILKLLLLASIICMNESRFLLTYK*LKFYRCLNHYLI 116
           ++  L+  SIIC+ E+RF + +    F+R   H +I
Sbjct: 99  VIAYLMPVSIICLFENRFYILFASKTFWRYARHPII 134


>U29613-4|AAP82648.2|  165|Caenorhabditis elegans Hypothetical
           protein K02A6.3b protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 399 SEHDNVGLWIN*NALLP*LCFCK 467
           +E    GLWI  NALL  +C+C+
Sbjct: 95  AERIGFGLWIRKNALLKRICWCR 117


>U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical
           protein K02A6.3a protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 399 SEHDNVGLWIN*NALLP*LCFCK 467
           +E    GLWI  NALL  +C+C+
Sbjct: 413 AERIGFGLWIRKNALLKRICWCR 435


>Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical
           protein F15A4.7 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 210 FRIACISSSPRVIAFSMCWANLYISN*FSLSE*VDISFYCEKLCK 344
           +++AC+S   R I  S+C+ ++ IS  F L     ++F     CK
Sbjct: 219 YKLACLSDRVRSIERSLCFTSISISCTFLLVAGTQLTFATCASCK 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,190,112
Number of Sequences: 27780
Number of extensions: 271037
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)