Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p15f
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.37 
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   1.5  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    26   3.5  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   3.5  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   3.5  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.1  

>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 342 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 473
           P+  T  +L      ++IL T+  SL   + VSP  Y +FT LL
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 237 RSLAVQLQTAASTATAKVRTETIVPIESN 151
           R L +  +  A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 115 KGANI-LFVHQISIRLDRNNGFRSHLSRSCAR 207
           KGA    +V  +S R DR++ FRSH S    R
Sbjct: 32  KGARYNRYVDDVSSRRDRHDSFRSHESNKIRR 63


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 318 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 488
           N  L+ F  T T    LLP++     I  ++TV LSL +    S V+ L+F +L  +   
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349

Query: 489 LRRITTRM 512
           +  +T ++
Sbjct: 350 VNELTLKL 357


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 463 VNIRYFTGLTATGRSSDNATVCRIVEFSME 374
           +N+ Y + L+ATG S +  TV  I E + E
Sbjct: 94  INVEYQSNLSATGESVNTTTVSAINEDTRE 123


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 352 LPFNCYLFPWRILRSCIPSHYRWIFP 429
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 539  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 444
            W +LLV  +  C NS   +R+G  Q   +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,897
Number of Sequences: 5004
Number of extensions: 52483
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)