Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p15f
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 33 0.13
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 33 0.22
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) 33 0.22
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.6
SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 28 4.8
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 6.4
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28) 27 8.5
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 323 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA---VNHPEFSE 493
C G +++ ++ A C G + P+Y +++ G R+ P H + HP ++
Sbjct: 93 CGGSLVSPTWVVTAAHCIAGSSHTPSY-KVVTGEHIRNSPEGTEQTHDVKRIITHPTYNS 151
Query: 494 ENYDKDVSIVRVTHAI 541
D++++ ++ +
Sbjct: 152 PQLSNDIALIELSSPV 167
>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
Length = 275
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 478 MVNSK-VNIRYFTGLTATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTSALLE 314
M+NS+ +N FTG TGR AT +V+ +E GS ++V+ + + +E
Sbjct: 215 MINSRGINALTFTGSLETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVE 270
>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
Length = 333
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 284 EVFLPILNQW--FQQCAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRSEPGEIS 454
E F+ + W QC+G ++ H ++ A C H G+++ I+ G S S E+
Sbjct: 138 EPFVSSVKLWSDVMQCSGTLIGPCHVITAAHCIHNGKWFVSPLTAILVGVSNTSSTDELD 197
Query: 455 YVHFAV 472
Y FAV
Sbjct: 198 Y--FAV 201
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = +2
Query: 284 EVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSS---RRSEPGEIS 454
+V L + Q+C G ++ L+ A CF F P + G S RR G+
Sbjct: 1253 QVALTLSGNPVQRCGGALIAADWVLTAAHCF-DRFSMPPEWTVQVGVSDMRRRDGKGQSL 1311
Query: 455 YVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGPNIQQGAII 577
+ HP+++ +++ D++++++ F + I+
Sbjct: 1312 SIKAIFVHPQYNSSSHEHDLAVLQLQQPAEFNSRVSPICIV 1352
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.7 bits (66), Expect = 0.91
Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 314 FQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA--VNHPEF 487
F C G ++++ ++ A C H Y ++ +R + + + HP++
Sbjct: 129 FHTCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKY 188
Query: 488 SEENYDKDVSIVRVTHAIHF 547
++ D++++ + + F
Sbjct: 189 NDRRIVNDIALLELATPVQF 208
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 476 HPEFSEENYDKDVSIVRVTHAIHF 547
HP +S ++YD D++++R+ + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222
>SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08)
Length = 235
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 323 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPG--EISYVHFAVNHPEFSEE 496
C +L+ L+ A C +PA + AG+ RR ++ V ++H EFS
Sbjct: 111 CGASLLSPGWALTAAHCVQRSS-NPADYTLAAGAHRRVNDAHAQVLRVSQVISHKEFSMG 169
Query: 497 NYDKDVSIVRVTHAIHFGPNI 559
+ DV+++R++ + I
Sbjct: 170 HLRNDVTLLRLSAPVQLSDKI 190
>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 473
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 269 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 391
+LV +E + P N+W ++ +LT Y STA G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150
>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 339 SPTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLLTIPNSL 491
SP+T+ Q++P + + L T + S +LPV + FT IP +
Sbjct: 143 SPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQSFRMTFTPPSMIPKPI 193
>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
Length = 1643
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 225 VQLQTAASTATAKVRTETIVPIESNGDLMNE 133
V ++T TA K E P+ESN DL +
Sbjct: 342 VSMETEDGTANPKADVEMDAPVESNNDLKQD 372
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,640,991
Number of Sequences: 59808
Number of extensions: 394133
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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