Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p15f
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    24   1.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.8  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 553 WAEVDGMCYSYDAHILVVILLREFGMV-NSKVNIRYFTG 440
           W +  G C S   HI++V L  EFG++ + K++  ++ G
Sbjct: 46  WFKAIGTCGS---HIIIVGLFYEFGLITHVKLSSDWYMG 81


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 579 WIIAPCWMFGPKWMACVTRTMLTSL 505
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 579 WIIAPCWMFGPKWMACVTRTMLTSL 505
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 579 WIIAPCWMFGPKWMACVTRTMLTSL 505
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 156 SNGDLMNE*NIRSFYRYIHDLIFIT 82
           SNGD + E N+ +  +  +D +FIT
Sbjct: 42  SNGDYIEENNMPNGMQIWNDKVFIT 66


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 362 LKGSGSW*EQYQRTVGTIDSR 300
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,801
Number of Sequences: 438
Number of extensions: 3993
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)