Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p14f
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof...    29   1.4  
At1g47900.1 68414.m05334 expressed protein                             29   1.4  
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    29   1.9  
At4g23700.1 68417.m03411 cation/hydrogen exchanger, putative (CH...    27   7.5  
At5g07400.1 68418.m00847 forkhead-associated domain-containing p...    27   9.9  
At2g46070.1 68415.m05731 mitogen-activated protein kinase, putat...    27   9.9  

>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 366

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 141 EEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHCTATRVTIVIRAGTVNMTRPA 317
           EE  FP  L++R  +P+G V+A   T+ H DW +       T   + +RA  +   R A
Sbjct: 269 EEHYFPTLLNMR--DPQGCVSA---TVTHVDWSVNDHGHPRTYKPLEVRAELIQKLRSA 322


>At1g47900.1 68414.m05334 expressed protein
          Length = 1054

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 151  CPSSASHPDTILAPALTFSTKVRAGSADTTATPAIATR 38
            CPS +   DT  +P+   S   R+GS+ T ATP  A+R
Sbjct: 1006 CPSDSETSDTTTSPSRVGSRLSRSGSS-TNATPEKASR 1042


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 104 QGRRQDRIRMGSRRRTVPLPAVTAHGEP*GSSQRLWSHH--HPQRLGTHG 247
           QG +Q +   G  ++ +P+P +  H  P  S   L  HH   P ++  HG
Sbjct: 569 QGYQQQQQHQGHPQQMLPMPNMPHHQLPPSSHMPLHPHHLPRPMQMPPHG 618


>At4g23700.1 68417.m03411 cation/hydrogen exchanger, putative
           (CHX17) similar to Na+/H+-exchanging protein slr1595 -
           Synechocystis sp., EMBL:D90902; monovalent cation:proton
           antiporter family 2 (CPA2) member, PMID:11500563
          Length = 820

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/59 (20%), Positives = 29/59 (49%)
 Frame = -2

Query: 337 SVVSKTTAGRVMLTVPALMTMVTRVAVQ*AAVSPQSLWMMVAPQALTAPSGFTMRSDSW 161
           S+ +     R++  +  L T + ++A+  AAV+  + W+++A     +  G +  +  W
Sbjct: 168 SITAFPVLARILAEIKLLTTDIGKIALSAAAVNDVAAWILLALAVALSGEGSSPLTSLW 226


>At5g07400.1 68418.m00847 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 1084

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +3

Query: 354 LYDESIQQIVQPHDIGLIKFGRSLVFNDYVQPIRLQSSYHKDYNYD 491
           +YDE  +++V   D+G +KF R+ +   YV  +R++ S  ++ + D
Sbjct: 93  VYDEFRRRLVGVEDLGNLKF-RASLNGVYVNRVRVRKSKVQEVSID 137


>At2g46070.1 68415.m05731 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK12) mitogen-activated protein
           kinase (MAPK)(AtMPK12), PMID:12119167
          Length = 372

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 245 GCSLHCYSRNHSHQSRYSQHDTARRCFRDDRLFKPPTLRRIDTADC 382
           G + HC     +H  RY Q++   + F   R + PP +R I    C
Sbjct: 8   GSTEHCIKVVPTHGGRYVQYNVYGQLFEVSRKYVPP-IRPIGRGAC 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,714,397
Number of Sequences: 28952
Number of extensions: 211715
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)