Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p13r
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806...    30   2.0  
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713...    28   6.1  
06_03_0854 + 25400855-25403741,25406174-25407708                       28   8.0  
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898...    28   8.0  
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    28   8.0  

>03_04_0034 +
           16679624-16679940,16679980-16680199,16680319-16680624,
           16680703-16681044,16681066-16681257,16681533-16681684,
           16681803-16681974,16682017-16682338,16682414-16682862
          Length = 823

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 467 LKSSRDLGQGPEGDFHSRDNHWSGN 541
           L+SS  LG+ P+G F + D+ W+ N
Sbjct: 255 LRSSSGLGRNPDGTFVAEDDWWAAN 279


>08_02_1144 +
           24670224-24670607,24670723-24670928,24671211-24671310,
           24671539-24672864
          Length = 671

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 611 RYDSLPWPGAQRG 573
           R+ SLPWPG++RG
Sbjct: 38  RFSSLPWPGSKRG 50


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 667  TAMTIPDLSNXLQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV 527
            TA+T+   S     P TEPA++P    AL    TA L   + V +PV
Sbjct: 1365 TAVTVGTPSPSAPTPATEPALVPASASAL---ATAPLMQPNVVISPV 1408


>06_01_1095 +
           8984363-8984789,8985175-8985416,8985500-8985622,
           8985783-8985899,8986258-8986399,8986587-8986627,
           8987194-8987453,8987505-8987607,8987698-8987776,
           8987856-8988115
          Length = 597

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = -1

Query: 661 MTIPDLSNXLQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEI 482
           M  PDL N L+   +    +P L +ALN+V   +   +  +   +   A  + L T    
Sbjct: 155 MLDPDLFNVLRFTISAIPFVPLLLKALNDVQVFIRGVELGIWVAIGYLAQAIGLVTADAG 214

Query: 481 SAALESPVTNPVLVPYLENALNVIMDA 401
             A  S +T  ++VP+L+  L   + A
Sbjct: 215 RTAFISSLT-VIIVPFLDGILGAEIPA 240


>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +2

Query: 524 NHWSGNLALSSQDGGDDLVERLAKVRNHSGFSFRVLQXIRQVGNGHCGE 670
           N W G   +  ++  DD++ +     N +     + Q I+   +GH GE
Sbjct: 485 NIWRGIQEIMDEEVDDDVIVKAVDCSNQAEVDIELKQFIKGYSDGHKGE 533


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,149,234
Number of Sequences: 37544
Number of extensions: 290650
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)