Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p13f
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 31 0.10
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 28 0.97
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 1.7
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.2
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 2.2
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 25 6.8
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 25 6.8
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 25 9.0
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 25 9.0
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 9.0
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 31.1 bits (67), Expect = 0.10
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +1
Query: 199 EKIEAVPVTIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVAT 378
E A T ++T++ +P + L + + ++ P+ L + ++ L Q+ V +
Sbjct: 857 ETSSAFAKTYAEKEVTSINLPSVRKPLDESYYDHSISPF--DPLCQ--SSFLAPQTPVKS 912
Query: 379 PVIIPAMEVSL--WTLTEISAALESPVTNPV 465
+P +E + W + S+ LESPV NPV
Sbjct: 913 KHALPLVEANAPPWEPIDFSSLLESPVPNPV 943
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 444 LKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDGG 343
L S++ Q P GD++S D S SSQ G
Sbjct: 217 LNSNKKQSQSPNGDYNSSDESCSNKTVASSQRRG 250
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -1
Query: 504 HDHVEGILQVRNQNRVSYRALKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDG 346
H+ + L+ RN +S SS L S H SGNLAL S G
Sbjct: 203 HEMAQESLETRNPGNIS----SSSAPLASDQSPTVSSNHIHASGNLALGSNSG 251
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 94 VHELSNAIQSPYTSAAVLPYLETALNQMMAALHAGEKIEAVPVTIPA 234
V+EL+ P ++A+ P ++ +NQ+M+ A AVP IPA
Sbjct: 854 VNELNGVSTKP--ASAITPETKSTVNQIMSGGEALAAPVAVPAPIPA 898
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.2
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 208 EAVPVTIPALDLTAMTIP-DLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV 384
E +TIP ++T MTIP + + P E I + + E +T + T + T
Sbjct: 22 EITTMTIPMEEITTMTIPMEEITTMTIPMEE---ITTMTTPMEE-ITTITTPMEETTT-- 75
Query: 385 IIPAMEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMD 507
I P +E + T+ + AA+ +P+ +P +E +++
Sbjct: 76 ITPMVETT--TILPM-AAMTTPMVETTTIPTVETTTTPMVE 113
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 457 NPVLVPYLENALNVIMDAMFA 519
N ++PYL+N L VI D + A
Sbjct: 326 NEAMIPYLQNILKVIRDTLTA 346
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/62 (20%), Positives = 30/62 (48%)
Frame = +1
Query: 328 LNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMD 507
LNE ++ S+ + P+M +++ E + +P+ P+L+P L + + + D
Sbjct: 478 LNEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPILIPLLISFIKEVKD 537
Query: 508 AM 513
+
Sbjct: 538 ML 539
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 216 YSFNLFSCVKSSHHLVESRLKVGQDRSRSVRALDGIGELMHGP 88
+SFNL S HLVES+ Q R+++A++ + P
Sbjct: 3 WSFNLSSNAALVQHLVESKFLTNQ---RAIKAMNATSRSFYCP 42
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 354 DWTKPGCHSSDYPCYGSLPLDPD 422
DW K G +SS++ GSL +P+
Sbjct: 57 DWLKQGKYSSEWIAMGSLNEEPN 79
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 47 SPLSCRWPSATRLPGPCMSSPMPSRA 124
S + +W S + GPC +P P A
Sbjct: 15 SSIDNKWSSLVKKVGPCTLTPHPEHA 40
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +1
Query: 52 AILSVAFGYQTTWTVHELSNAIQSPYTSAAVLPYLETALNQMMAALHAGEKIEAVPVTIP 231
A SVA Y + W H+ + T + PY++ QM + G I P +
Sbjct: 155 AFNSVAPCYGSQWQTHQSVHPYHVNNTHQYLKPYVQNVYPQMPSLNQPGLHIVNQPTYL- 213
Query: 232 ALDLTAMTIPDLSNALQDP 288
+ + T+P S +L P
Sbjct: 214 -APVPSATVPTNSVSLSMP 231
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 24.6 bits (51), Expect = 9.0
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
Frame = +1
Query: 133 SAAVLPYLETALNQMMAA----LHAGEKIEAVPVTIPALDLTAMTIPDLSNALQDPKTEP 300
S V Y AL+Q++ +H + P +PAL+ + + S + + +
Sbjct: 506 SFVVYTYAAIALDQLLTVRHNHVHIFTSLLIAPHILPALNQLFLIVESASTPQKLAEND- 564
Query: 301 AMIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPVTNPVLVPYL 480
YL +A+ ++ SQ A I+PA + L LT+I+ + +NP YL
Sbjct: 565 ----YLMKAVMRIII-----MSQEA---ILPAASLLLQHLTKITEEVSKNPSNPKFNHYL 612
Query: 481 ENALNVIMDAM 513
++ ++ ++
Sbjct: 613 FESIGALIRSL 623
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.129 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,138
Number of Sequences: 5004
Number of extensions: 44496
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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