Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p13f
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         36   0.020
SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    31   0.76 
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_21668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   27   9.4  

>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
 Frame = +1

Query: 145 LPYLETALNQMMAALHAGEKIEAVPVTIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQ 324
           +P +  A+ +++ A+   E + AVP  +PA+      +P++  A+  P+  PA +P +  
Sbjct: 41  VPEIVPAVPEVVPAVP--EIVPAVPEVVPAVPEVVPVVPEVEPAV--PEVVPA-VPEIVP 95

Query: 325 ALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPV-TNPVLVP 474
           A+ EVV AV   +   A P ++PA+   +  + E+  A+   V   P +VP
Sbjct: 96  AVPEVVPAV--PEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVP 144



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +1

Query: 199 EKIEAVPVTIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVAT 378
           E + AVP  +PA+      +P++  A+  P+  PA +P +  A+ EVV AV    +    
Sbjct: 120 EIVPAVPEVVPAVPEIVPAVPEIVPAV--PEIVPA-VPEIVPAVPEVVPAVPEVVAVPEP 176

Query: 379 PV-IIPAMEVSLWTLTEISAALESPVTNPVLVPYLENALNV 498
           PV  + A+E  L  L +      +     +L  YL+  L++
Sbjct: 177 PVDRLEALERKLKALEDEKLGDNTAHALALLRRYLDRPLSI 217


>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 23/107 (21%), Positives = 43/107 (40%)
 Frame = -1

Query: 372 NLALSSQDGGDDLVERLAKVRNHSGFSFRVLQSIRQVGNGHCGEVQSGNGNGYSFNLFSC 193
           NL       G+  +  L  +R+ +      L       +G   +   GN N Y+F+ FSC
Sbjct: 208 NLEKRVSSSGETKLSDLGSIRSDANLHSMDLAIQSNTVDGLSAQASGGNQNSYAFSCFSC 267

Query: 192 VKSSHHLVESRLKVGQDRSRSVRALDGIGELMHGPGSLVAEGHRQDS 52
            +   + + S L V  + + +      +  L   P + + +GH+  S
Sbjct: 268 -EIPQNSLRSELPV--NTTLTTHHPSSLHRLESPPHTYMVKGHQASS 311


>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 70  FGYQTTWTVHELSNAIQSPYTSAAVLPYLETALNQMMAALHAGEKIEAV-PVTIPALDLT 246
           FG   T  +H  S+A  + Y   + L  ++      ++   A  ++  + P+TIP L+LT
Sbjct: 174 FGGIKTVELHNFSDASTNGYGQCSYLRLIDNEDRIHVSLAMAKSRVTPLKPITIPRLELT 233

Query: 247 AMTIP-DLSNALQDPKTEPAM 306
           A  +  ++S  LQ     P M
Sbjct: 234 AALVSGNVSAFLQKELGYPGM 254


>SB_21668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 289 KTEPAMIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISA 435
           +T+PA    +G ALN  ++++ T  ++   P   P++E+ L   T  +A
Sbjct: 45  ETDPASFLLVGNALNSRISSLCTQLNETGIPSEPPSVELDLTLDTSATA 93


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 124  PYTSAAVLPYLETALNQMMAALHAGEKIEAVPVTIPALDLTAMTIPDLSNA 276
            P+ S +V  +LE+    ++AAL   + + + P  + A     +  PD+S A
Sbjct: 909  PWLSVSVPEWLESKFPDIIAALEHNQHVISSPFDLHATLSHVLNYPDVSTA 959


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 337 VVTAVLTGQSQVATPVIIPAMEVSLWTLTEISA 435
           + T   +  S++ + VI+P+   S W LT++S+
Sbjct: 402 ISTTTYSSYSKIPSTVILPSASPSRWRLTQLSS 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.129    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,889
Number of Sequences: 59808
Number of extensions: 384030
Number of successful extensions: 1114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)