Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p13f
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   4.7  
AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF000262-7|AAN60523.1|  544|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
 Frame = +1

Query: 154  LETALNQMMA-ALHAGEKIEAVPVTIPAL---DLTAMTIPDLSNALQDPKTEPAMIPYLG 321
            L+TA+N+    A    + ++A+ V    L   D T   I  + + + DP  +PA+I  L 
Sbjct: 1898 LQTAVNEASPLACEGTDDVDALQVASDKLTKQDRTIRKIHAILDTIDDPVQKPAIIESLD 1957

Query: 322  QALNEVVTAVLTGQSQV------ATPVIIPAMEVSLWTLTEISAALESPVT 456
            +  +++  A      Q+       TPV++P  E +   L EI  A+    T
Sbjct: 1958 KIKDQINNARDNINRQIDNLNYNQTPVVVP-KESTKTPLNEIEDAVRQAST 2007


>AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical
           protein Y41C4A.5 protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 348 GGDDLVERLAKVRNHSGFSFRVLQSIRQVGNGHCGEVQSGNGNGYS 211
           GG+ +V     V + SG S     +    GN + G   SG+GNG S
Sbjct: 188 GGELVVTNPGSVGSGSGNSGNSSNNNNSSGNSNYGSNNSGSGNGNS 233


>AF000262-7|AAN60523.1|  544|Caenorhabditis elegans Hypothetical
           protein C48E7.2 protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/66 (21%), Positives = 32/66 (48%)
 Frame = -1

Query: 351 DGGDDLVERLAKVRNHSGFSFRVLQSIRQVGNGHCGEVQSGNGNGYSFNLFSCVKSSHHL 172
           D  D ++ +L +  N   F   + ++IRQ+   HC  +      G +  +   +++ H+L
Sbjct: 323 DESDGIIRKLGE-SNGGIFIVDIRRAIRQICRHHCESLIREQFEGRAIRVMRLLENRHYL 381

Query: 171 VESRLK 154
            E +++
Sbjct: 382 DEEQVE 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.129    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,180
Number of Sequences: 27780
Number of extensions: 273917
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)