Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p12r
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0473 - 3639533-3639598,3639848-3639955,3640037-3640126,364... 34 0.12
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 31 0.85
02_02_0701 - 13067547-13067580,13067725-13067864,13068525-130686... 31 0.85
12_01_0135 + 1042889-1044255,1045368-1045809 30 1.5
11_01_0133 + 1121392-1122731,1123417-1123858 30 1.5
04_04_0088 + 22723308-22724480 30 1.5
10_08_0690 - 19913111-19913488,19913585-19913941 29 2.6
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710 29 2.6
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 29 4.5
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 28 6.0
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 28 7.9
>03_01_0473 -
3639533-3639598,3639848-3639955,3640037-3640126,
3640203-3640394,3640952-3641018,3641472-3641512,
3641762-3641779,3641984-3642055,3642154-3642237,
3642296-3642373,3642703-3642759,3643374-3643469
Length = 322
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 252 LNEEANVHIYRKMCTFAAISTFTVTYIHILYY 347
L EE+NV I MCT+ + TF+ Y+H+L++
Sbjct: 44 LMEESNVQIAHSMCTYNSAKTFS-KYLHVLFH 74
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 529 ENPRPRAFRASRLTLLKP----MPPPATRIVGFWVCPTSRAVMADMRTPAAIAILW 684
E PRP + R R + P PP R +G + P AV ++ +TPA++ LW
Sbjct: 464 EPPRPPSHRGFRPSPPPPGVAYNSPPLARHIGRRLHPAPLAVASNRKTPASLGQLW 519
>02_02_0701 -
13067547-13067580,13067725-13067864,13068525-13068659,
13068761-13068808,13068834-13068859,13068990-13069057,
13069101-13069112,13070359-13070415,13070817-13070935,
13071700-13071810,13076755-13077066
Length = 353
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 248 LPKRGG*CAHLPENVYICRNIYFYRNIYTYIILFFLLTSFYCKCKMTIKEKYYIFER-EM 424
LP RG H P +C+ + + N+ IL+F+ ++C + K IF+R +
Sbjct: 150 LPTRG--YLHAPSFENLCQTVVSFTNLLKMYILWFISWIYFCCFNLGRKHFVCIFDRMDS 207
Query: 425 RLVVSLTHVTQPGECFNEE 481
L++ +P + EE
Sbjct: 208 SLMLITCQPLRPQQARGEE 226
>12_01_0135 + 1042889-1044255,1045368-1045809
Length = 602
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 679 GSLWPPAFAYLPSRPGKWGKPRTRLSG 599
G WP F L SRPG G PR RL+G
Sbjct: 356 GLQWPGLFHILASRPG--GPPRVRLTG 380
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 679 GSLWPPAFAYLPSRPGKWGKPRTRLSG 599
G WP F L SRPG G PR RL+G
Sbjct: 347 GLQWPGLFHILASRPG--GPPRVRLTG 371
>04_04_0088 + 22723308-22724480
Length = 390
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 582 DAATSDPDSRVLGLPHFPGRDGRYANAGGHSD 677
D+ TS+P+ R++ LP +GRY GG D
Sbjct: 218 DSVTSNPEVRLIQLPPLMPINGRYLRGGGLDD 249
>10_08_0690 - 19913111-19913488,19913585-19913941
Length = 244
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 586 PPPATRIVGFWVCP-TSRAVMA 648
PPPA R++G W P T+R V+A
Sbjct: 11 PPPAVRVLGGWASPFTNRVVVA 32
>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
Length = 640
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 552 SGLKIDVVEADAATSDPDSRVLGLPHFPGRDGRY 653
SGL + V A AA D DS L L FPG + R+
Sbjct: 156 SGLAMRFVTAAAANDDSDSAELTLAGFPGAELRF 189
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +3
Query: 501 LSSPDLYVVGESSAARVSGLKIDVVEADAATSDPDSRVLGLPHFPGRDGRYANA 662
+S+ D+ +GE+ A +VSG + ++ + T + P F G++G+Y +
Sbjct: 382 VSAGDICAIGETIADKVSGTPLPTIKIEEPTVRMSFSINTSP-FVGKEGKYVTS 434
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 625 GKPRTRLSGSLVAASASTTSILRP 554
G+ R LSG VA++A TTS+L P
Sbjct: 22 GRRREWLSGGAVASAARTTSLLHP 45
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 660 RSHICHHGPGSGANPEPDYP 601
R+ CHHG GS A P P P
Sbjct: 56 RAPPCHHGCGSAATPTPATP 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,083,736
Number of Sequences: 37544
Number of extensions: 426415
Number of successful extensions: 1235
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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