Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p12r
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)                   30   1.5  
SB_14420| Best HMM Match : SH3_1 (HMM E-Value=0.4)                     29   2.7  
SB_27219| Best HMM Match : Cad (HMM E-Value=4)                         28   8.1  
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)                    28   8.1  

>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 17  ENYLLLKNVNDK-QNILFFAHYIICRRL 97
           ENY+LL+ ++   Q  L+FA+YI+ R+L
Sbjct: 104 ENYILLRKLHSTAQTTLYFANYILLRKL 131



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 5   SFNNENYLLLKNVN-DKQNILFFAHYIICRRL 97
           +F   NY++L+ ++   Q  L+FA+YI+ R+L
Sbjct: 157 TFYYANYIILRKLHYTAQTTLYFANYILLRKL 188


>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
          Length = 2182

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 160 CSHIPNRHGHCE 195
           C H+P +HGHCE
Sbjct: 237 CDHVPRKHGHCE 248


>SB_14420| Best HMM Match : SH3_1 (HMM E-Value=0.4)
          Length = 250

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -3

Query: 649 LPSRPGKWGKPRTRLSGSLVAASASTTSILRPETRAAEDSPTTYKSGDDKYVFTLQLLVE 470
           +P    KW K   RL       S S   IL  +    EDSP    +G   Y++ L L + 
Sbjct: 153 IPRVEAKWSKEEERLRRKYPPTSGSGVHILLIQYTEEEDSPDNRWTG---YMYALVLFLS 209

Query: 469 AFSRLRDVRQ 440
             +R   ++Q
Sbjct: 210 GITRTLVLQQ 219


>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
          Length = 297

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 287 NVYICRNIYFYRNIYTYIILFFLLTSFYCKCK 382
           NVY   N+Y+  N+Y  + +++ +  +Y + K
Sbjct: 127 NVYYSVNVYYSVNVYYSVTVYYSINVYYSRFK 158


>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
          Length = 610

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 427 IGSFIDARHAAWRMLQRGVVK*IRIY 504
           IGS+++ RHAAW  L   +++ ++IY
Sbjct: 136 IGSYLNYRHAAWLRLIHNILR-VKIY 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,577,410
Number of Sequences: 59808
Number of extensions: 505644
Number of successful extensions: 1073
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)