Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p12r
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY305861-1|AAP74384.1|  194|Homo sapiens ladybird-like homeodoma...    31   3.8  
AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collag...    30   6.7  

>AY305861-1|AAP74384.1|  194|Homo sapiens ladybird-like homeodomain
           protein 2 protein.
          Length = 194

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -3

Query: 670 WPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPETRAAEDS----PTTYKSGDD 503
           +PP  A  P+RPG W   R  L     + + + +   RP+ RA  D+    P   K    
Sbjct: 26  FPPLAASRPARPGGWRWARRDLC-KTASRAENNSQACRPQRRAGPDALGPGPFGRKRRKS 84

Query: 502 KYVFTLQLLVE 470
           +  FT Q ++E
Sbjct: 85  RTAFTAQQVLE 95


>AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collagen
           precursor variant protein.
          Length = 1463

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 528 GESSAARVSGLKIDVVEADAATSDPDSRVLGLPHFPGRDGR 650
           GES A   SGL     E        D  + G+P  PGRDGR
Sbjct: 271 GESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGR 311


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,373,016
Number of Sequences: 237096
Number of extensions: 2426991
Number of successful extensions: 5343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5327
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)