Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p12r
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-5|AAB52668.1|  478|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF303267-1|AAG50225.1|  478|Caenorhabditis elegans kynureninase ...    30   1.8  
Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL033514-3|CAC70124.1|  218|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL033514-2|CAA22093.2|  233|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF172091-1|AAD48875.1|  233|Caenorhabditis elegans NOB-1B protei...    27   9.4  
AF172090-1|AAD48874.1|  218|Caenorhabditis elegans homeodomain p...    27   9.4  

>U56965-5|AAB52668.1|  478|Caenorhabditis elegans Hypothetical
           protein C15H9.7 protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 456 SLENASTRSCKVNTYLSSPDLYVVGESSAARVSGLKIDVV 575
           SLEN  +RSC +  YL      + GE+S  R + L I ++
Sbjct: 366 SLENLRSRSCYLTGYLEYLVKTLFGENSEQRTTKLSISII 405


>AF303267-1|AAG50225.1|  478|Caenorhabditis elegans kynureninase
           protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 456 SLENASTRSCKVNTYLSSPDLYVVGESSAARVSGLKIDVV 575
           SLEN  +RSC +  YL      + GE+S  R + L I ++
Sbjct: 366 SLENLRSRSCYLTGYLEYLVKTLFGENSEQRTTKLSISII 405


>Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical
           protein C31C9.8 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 11  NNENYLLLKNVNDKQNI 61
           N+ENY LLKNV + Q+I
Sbjct: 221 NHENYFLLKNVREVQHI 237


>AL033514-3|CAC70124.1|  218|Caenorhabditis elegans Hypothetical
           protein Y75B8A.2b protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 682 TGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 548
           T   WP A A +PS  G+    R   +GS    + S+T ++ P T
Sbjct: 27  TPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71


>AL033514-2|CAA22093.2|  233|Caenorhabditis elegans Hypothetical
           protein Y75B8A.2a protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 682 TGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 548
           T   WP A A +PS  G+    R   +GS    + S+T ++ P T
Sbjct: 27  TPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71


>AF172091-1|AAD48875.1|  233|Caenorhabditis elegans NOB-1B protein
           protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 682 TGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 548
           T   WP A A +PS  G+    R   +GS    + S+T ++ P T
Sbjct: 27  TPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71


>AF172090-1|AAD48874.1|  218|Caenorhabditis elegans homeodomain
           protein NOB-1A protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 682 TGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 548
           T   WP A A +PS  G+    R   +GS    + S+T ++ P T
Sbjct: 27  TPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,042,755
Number of Sequences: 27780
Number of extensions: 397938
Number of successful extensions: 1148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)