Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p12r
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17950.1 68416.m02285 expressed protein ; expression supporte...    29   2.2  
At5g07490.1 68418.m00857 hypothetical protein                          29   2.9  
At1g78010.1 68414.m09091 tRNA modification GTPase, putative simi...    29   2.9  
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ...    28   5.0  
At3g01870.1 68416.m00132 hypothetical protein                          27   8.8  

>At3g17950.1 68416.m02285 expressed protein ; expression supported
           by MPSS
          Length = 211

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 663 RRSHICHHGPGSGANPEPDYPGRWWR 586
           RR+H     P + A PEP    +WWR
Sbjct: 75  RRNHQRKRPPSNSAEPEPHRRRKWWR 100


>At5g07490.1 68418.m00857 hypothetical protein 
          Length = 145

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 498 YLSSPDLYVVGESSAARVSGLKID 569
           + S+PD+ V G+S AAR+ GL I+
Sbjct: 74  FFSNPDVGVKGDSIAARIEGLTIE 97


>At1g78010.1 68414.m09091 tRNA modification GTPase, putative similar
           to tRNA modification GTPase trmE [strain PCC 7120,
           Anabaena sp.] SWISS-PROT:Q8YN91
          Length = 560

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/64 (25%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
 Frame = -3

Query: 643 SRPGKWGKPRTRLSGSLVAASASTTSILRPETRAAEDSPTTYKSGDDKYVFTLQLLV-EA 467
           +R G+  +P ++    ++ +S+  TS+L+P  +++E++   +K GD++ V  +  +V +A
Sbjct: 23  TRGGRISRPISKNLCFVLFSSSPKTSLLKPRAQSSENNSLVFK-GDERVVGLVGKVVDDA 81

Query: 466 FSRL 455
           F ++
Sbjct: 82  FDKV 85


>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
           nearly identical to SCARECROW [Arabidopsis thaliana]
           GI:1497987
          Length = 653

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 679 GSLWPPAFAYLPSRPGKWGKPRTRLSG 599
           G  WP  F  L SRPG  G P  RL+G
Sbjct: 411 GLQWPGLFHILASRPG--GPPHVRLTG 435


>At3g01870.1 68416.m00132 hypothetical protein
          Length = 583

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 682 TGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPETRAAEDSP 527
           T   +P A   +PS  G +GK R  L G  V   + +TS  +   R  E  P
Sbjct: 56  TAFTFPSALPVIPSGGGNFGKGRIDLGGLEVIQVSISTSTSQRVWRTYEGGP 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,427,638
Number of Sequences: 28952
Number of extensions: 339072
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)