Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p12f
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    29   0.59 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   1.8  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   3.1  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   3.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   5.5  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    25   7.2  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   7.2  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 22  KPGSLLQVGKMKFTLLFVLVIVTAVAADEEAGVRSNGRPDLVIGT 156
           KP + L++GK + T+L VL  +++ A     G+  N    L +GT
Sbjct: 83  KPSAFLELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGT 127


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 274 TAREVGQTQNPTIRVAGGGIGFNNVNLEARNARGRGFSYNVQIW 405
           +   VG+  N  +R+A G  G   VN+E R+ +      NV ++
Sbjct: 366 SGNSVGEDTNALVRIATGSAGEMYVNVETRSIQSENIG-NVSLY 408


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 381 SSAARVSGLKIDVVEADAATSDPDSRVLGLPHFPGRDGRYANAGGHSDPVEVRLRTRRRW 202
           +SAA + GL+      +     P   ++GLP+   ++ R    GG  D  E    + R+W
Sbjct: 810 ASAASI-GLEAGQDSTNTYNQAPLDLLMGLPYITMKNYRNVFYGGVKDIQEASETSERKW 868

Query: 201 S 199
           S
Sbjct: 869 S 869


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 179 YARFVSIDQRRLVRSLTSTGSLWPPAFAYLPSRPG--KWGKPRTRLSGSLVAASASTTSI 352
           ++RF S+    ++   T  G++    FAYL  R    KW K ++ LS +    S      
Sbjct: 25  FSRFGSVSNLEIINKSTPVGTI--QRFAYLNFRTDEDKWQKCKSYLSNATFKGSKLRIEE 82

Query: 353 LRP 361
            RP
Sbjct: 83  ARP 85


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +3

Query: 360 PKRARPRI-LLQRTNLGT--INTYLLYNSSLKHSPGCVTCVNETTNRISRSKI 509
           P + +P + +L+ +NL +  ++  +LYNS +  SP   + + + TNR ++ ++
Sbjct: 154 PLKEQPSLDVLRISNLSSKILHRLILYNSKVGDSPRFCSALFQITNRATQLRL 206


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 299 RTRLSGSLVAASASTTSILRPETRAAEDSPTTYKSGDDKYVFTLQLLVEAFSRLRDV 469
           R R+   LV A+  + S + P      DSP T    D+ ++  +  LVEA+ ++RD+
Sbjct: 275 RIRVLKYLVLANMLSESEINPF-----DSPETQPYKDNPHIIAMTKLVEAY-QIRDI 325


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
 Frame = +1

Query: 103 DEEAGVRSNGRPDLVIGTITSQDS----LIRSFRFNRP--ASPSSQSHFHRI--AMAAGV 258
           DE +  +++G+P LVIG     DS    L R+ RF+R    +  SQ    +I   MA G+
Sbjct: 303 DELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGL 362

Query: 259 RIS 267
           ++S
Sbjct: 363 KLS 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,460
Number of Sequences: 5004
Number of extensions: 46735
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)