Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p12f
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_14420| Best HMM Match : SH3_1 (HMM E-Value=0.4)                     29   1.9  
SB_40002| Best HMM Match : AvrB_AvrC (HMM E-Value=2.5)                 29   2.5  
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)                    28   5.7  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)                    27   9.9  

>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 291 PHFPGRDGRYANAGGHSDPVEVRLRTRRRWSIETKRAY 178
           PH PG DG+ +  G      + RL   RR ++ET ++Y
Sbjct: 476 PHEPGNDGQVSTTGS----AQTRLNNDRRLAMETIKSY 509


>SB_14420| Best HMM Match : SH3_1 (HMM E-Value=0.4)
          Length = 250

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +2

Query: 266 LPSRPGKWGKPRTRLSGSLVAASASTTSILRPETRAAEDSPTTYKSGDDKYVFTLQLLVE 445
           +P    KW K   RL       S S   IL  +    EDSP    +G   Y++ L L + 
Sbjct: 153 IPRVEAKWSKEEERLRRKYPPTSGSGVHILLIQYTEEEDSPDNRWTG---YMYALVLFLS 209

Query: 446 AFSRLRDVRQ 475
             +R   ++Q
Sbjct: 210 GITRTLVLQQ 219


>SB_40002| Best HMM Match : AvrB_AvrC (HMM E-Value=2.5)
          Length = 633

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 165 RSNCPNHQVRSTVRSHACLFICCHRSDNHQD 73
           R+N P+H  R T R + C   C H +D++ D
Sbjct: 117 RTNRPSHLARKTPRDYPC--ACAHDTDHNSD 145


>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1810

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +2

Query: 215  VRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPETRAAEDSPTT 394
            +R+ +ST SLWPP  +      G W  P  R   S  +      S  RP  +  +D   T
Sbjct: 1268 MRAGSSTTSLWPPIASTANGGQGDWRFP-PRADASSSSVFVPVPSYDRPNAQDRQDEAYT 1326


>SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 118 VRSNGRPDLVIGTITSQDSLIRSFRFNRPASPSSQSHFH 234
           V++    DLVIGT++ +D+L  S     P  P S   F+
Sbjct: 266 VKAKPHLDLVIGTVSLEDTLDLSITSANPQVPQSSLAFY 304


>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
          Length = 610

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 488 IGSFIDARHAAWRMLQRGVVK*IRIY 411
           IGS+++ RHAAW  L   +++ ++IY
Sbjct: 136 IGSYLNYRHAAWLRLIHNILR-VKIY 160


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -1

Query: 459  SLENASTRSCKVNTYLSSPDLYVVGESSAARVSGLKIDVVEADAATSDPDSRVLGLPHFP 280
            SL++ S     +N      +  V G+    RV G     VE      DPD  ++G  +  
Sbjct: 1971 SLDDESKNENAINIDSEHVETRVEGKVVGERVCG---STVEKKVKPHDPDRVIIGSENED 2027

Query: 279  GRDG 268
            GRDG
Sbjct: 2028 GRDG 2031


>SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 154 TITSQDSLIRSFRFNRPASPSSQSHFHR 237
           T+  Q++L+ S  FNRP++ + +SH  R
Sbjct: 240 TVKRQNNLLESEIFNRPSALNYRSHLRR 267


>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
          Length = 1311

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 360  GLKIDVVEADAATSDPDSRVLGLPHFPGRDGRYAN 256
            G   D+V+ D      D   L +PHFPG+   Y+N
Sbjct: 917  GFYFDMVKKDLGDLKDDQH-LTIPHFPGKVFAYSN 950


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,523,191
Number of Sequences: 59808
Number of extensions: 379582
Number of successful extensions: 991
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)