Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p12f
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-3|CAC70124.1|  218|Caenorhabditis elegans Hypothetical ...    32   0.23 
AL033514-2|CAA22093.2|  233|Caenorhabditis elegans Hypothetical ...    32   0.23 
AF172091-1|AAD48875.1|  233|Caenorhabditis elegans NOB-1B protei...    32   0.23 
AF172090-1|AAD48874.1|  218|Caenorhabditis elegans homeodomain p...    32   0.23 
U56965-5|AAB52668.1|  478|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF303267-1|AAG50225.1|  478|Caenorhabditis elegans kynureninase ...    30   1.2  
AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z83744-1|CAB06041.1|  253|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    27   8.7  

>AL033514-3|CAC70124.1|  218|Caenorhabditis elegans Hypothetical
           protein Y75B8A.2b protein.
          Length = 218

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 200 DQRRLVRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 367
           D +  + S+  T   WP A A +PS  G+    R   +GS    + S+T ++ P T
Sbjct: 16  DSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71


>AL033514-2|CAA22093.2|  233|Caenorhabditis elegans Hypothetical
           protein Y75B8A.2a protein.
          Length = 233

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 200 DQRRLVRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 367
           D +  + S+  T   WP A A +PS  G+    R   +GS    + S+T ++ P T
Sbjct: 16  DSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71


>AF172091-1|AAD48875.1|  233|Caenorhabditis elegans NOB-1B protein
           protein.
          Length = 233

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 200 DQRRLVRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 367
           D +  + S+  T   WP A A +PS  G+    R   +GS    + S+T ++ P T
Sbjct: 16  DSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71


>AF172090-1|AAD48874.1|  218|Caenorhabditis elegans homeodomain
           protein NOB-1A protein.
          Length = 218

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 200 DQRRLVRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 367
           D +  + S+  T   WP A A +PS  G+    R   +GS    + S+T ++ P T
Sbjct: 16  DSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71


>U56965-5|AAB52668.1|  478|Caenorhabditis elegans Hypothetical
           protein C15H9.7 protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 459 SLENASTRSCKVNTYLSSPDLYVVGESSAARVSGLKIDVV 340
           SLEN  +RSC +  YL      + GE+S  R + L I ++
Sbjct: 366 SLENLRSRSCYLTGYLEYLVKTLFGENSEQRTTKLSISII 405


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +2

Query: 230 STGSLWPPAFAYLPSRPGKWG-KPRTRLSGSLVAASASTTSIL--RPETRAA 376
           S+ S  PP  +  PS PG+ G +PRT  + S+  A+A+ T     RP +R+A
Sbjct: 502 SSSSKMPPPPSPSPSTPGRRGRRPRTLSTMSMEPAAAAVTPAPRGRPRSRSA 553


>AF303267-1|AAG50225.1|  478|Caenorhabditis elegans kynureninase
           protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 459 SLENASTRSCKVNTYLSSPDLYVVGESSAARVSGLKIDVV 340
           SLEN  +RSC +  YL      + GE+S  R + L I ++
Sbjct: 366 SLENLRSRSCYLTGYLEYLVKTLFGENSEQRTTKLSISII 405


>AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical
           protein H34I24.2 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = +1

Query: 49  KMKFTLLFV-LVIVTAVAADEEAGVRSNGRPDLVIGTITSQDSLIRSFRFNRPASPSS-- 219
           K +F  L V L++ T V+ + + G  ++      +    S D+   +     PASP+S  
Sbjct: 2   KFRFLALCVGLLLATLVSGNGDPGASNSSSVATTVAASPSTDASSSAAPSQAPASPTSVD 61

Query: 220 QSHFHRIAMAAGVRISAITAREVGQTQNPT 309
            S   + A ++G  +S ++      T  P+
Sbjct: 62  PSATTQAAASSGAPVSTVSPSSGATTAEPS 91


>AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical
           protein C49D10.8 protein.
          Length = 662

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 76  LVIVTAVAADEEAGVRSNGRPDLVIGTITSQDSLIRSFRFN 198
           L+I+   A   ++G R+N  PD V   +T  D+L  ++R++
Sbjct: 364 LIIIDKDAMYVQSGHRNNSDPDFVSSEMTIDDALKLNYRWS 404


>Z83744-1|CAB06041.1|  253|Caenorhabditis elegans Hypothetical
           protein C06A12.3 protein.
          Length = 253

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 535 KMTIKEKYYIFEREMRLVVSLTHVTQPGECFNEEL 431
           K+++  KYY   RE+   +S  H T+  EC  ++L
Sbjct: 210 KISLHTKYYRNARELLKFISPDHATRFNECVAQKL 244


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 221 SLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPETRAA 376
           ++TSTGS  PP+ + +PS       P+     S   A ASTT +L     +A
Sbjct: 285 TITSTGSSNPPSTSTVPSTTTSTTTPK---PSSPSTAEASTTPVLTSNLTSA 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,070
Number of Sequences: 27780
Number of extensions: 281534
Number of successful extensions: 989
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)