Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p12f
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29120.2 68414.m03565 expressed protein 31 0.66
At1g29120.1 68414.m03564 expressed protein 31 0.66
At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase... 30 1.1
At3g17950.1 68416.m02285 expressed protein ; expression supporte... 29 1.5
At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase... 29 2.0
At5g07490.1 68418.m00857 hypothetical protein 29 2.0
At1g78010.1 68414.m09091 tRNA modification GTPase, putative simi... 29 2.0
At5g50950.2 68418.m06319 fumarate hydratase, putative / fumarase... 28 3.5
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 28 3.5
At4g33350.1 68417.m04741 chloroplast inner membrane import prote... 27 6.1
At3g01870.1 68416.m00132 hypothetical protein 27 6.1
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 27 8.1
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 30.7 bits (66), Expect = 0.66
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = +2
Query: 230 STGSLW--PPAFAYLPSRPGKWGKPRTR----LSGSLVAASASTTS 349
ST S W P F YLP R G + KP +R S +V+ASAS+ S
Sbjct: 2 STASSWIQQPPFRYLPDR-GGFSKPSSRSARQFSSGVVSASASSPS 46
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 30.7 bits (66), Expect = 0.66
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = +2
Query: 230 STGSLW--PPAFAYLPSRPGKWGKPRTR----LSGSLVAASASTTS 349
ST S W P F YLP R G + KP +R S +V+ASAS+ S
Sbjct: 2 STASSWIQQPPFRYLPDR-GGFSKPSSRSARQFSSGVVSASASSPS 46
>At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase,
putative similar to SP|P55250 Fumarate hydratase,
mitochondrial precursor (EC 4.2.1.2) (Fumarase)
{Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
Length = 492
Score = 29.9 bits (64), Expect = 1.1
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +1
Query: 4 IILKDQKPGSLLQVGKMKFTLLFVLVIVTAVAADEEAGVR---SNGRPDLVIGTITSQDS 174
++L + +PGS + GK+ T L +V A V SNG +L + +
Sbjct: 337 LVLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVFKPVIASA 396
Query: 175 LIRSFRFNRPASPSSQSHFHRIAMAAGVRISAI 273
L+ S R AS S + + R A RIS +
Sbjct: 397 LLHSVRLIADASASFEKNCVRGIEANRERISKL 429
>At3g17950.1 68416.m02285 expressed protein ; expression supported
by MPSS
Length = 211
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 252 RRSHICHHGPGSGANPEPDYPGRWWR 329
RR+H P + A PEP +WWR
Sbjct: 75 RRNHQRKRPPSNSAEPEPHRRRKWWR 100
>At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase,
putative similar to SP|P55250 Fumarate hydratase,
mitochondrial precursor (EC 4.2.1.2) (Fumarase)
{Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
Length = 510
Score = 29.1 bits (62), Expect = 2.0
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 3/132 (2%)
Frame = +1
Query: 10 LKDQKPGSLLQVGKMKFTLLFVLVIVTAVAADEEAGVR---SNGRPDLVIGTITSQDSLI 180
L + +PGS + GK+ T L +V A V SNG +L + +L+
Sbjct: 346 LPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTIGGSNGHFELNVFKPVIASALL 405
Query: 181 RSFRFNRPASPSSQSHFHRIAMAAGVRISAITAREVGQTQNPTIRVAGGGIGFNNVNLEA 360
S R AS S + + R A RIS + + + IG++N A
Sbjct: 406 HSIRLIADASASFEKNCVRGIEANRERISKLLHESL-----MLVTSLNPKIGYDNAAAVA 460
Query: 361 RNARGRGFSYNV 396
+ A G + V
Sbjct: 461 KRAHKEGCTLKV 472
>At5g07490.1 68418.m00857 hypothetical protein
Length = 145
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 417 YLSSPDLYVVGESSAARVSGLKID 346
+ S+PD+ V G+S AAR+ GL I+
Sbjct: 74 FFSNPDVGVKGDSIAARIEGLTIE 97
>At1g78010.1 68414.m09091 tRNA modification GTPase, putative similar
to tRNA modification GTPase trmE [strain PCC 7120,
Anabaena sp.] SWISS-PROT:Q8YN91
Length = 560
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/64 (25%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 272 SRPGKWGKPRTRLSGSLVAASASTTSILRPETRAAEDSPTTYKSGDDKYVFTLQLLV-EA 448
+R G+ +P ++ ++ +S+ TS+L+P +++E++ +K GD++ V + +V +A
Sbjct: 23 TRGGRISRPISKNLCFVLFSSSPKTSLLKPRAQSSENNSLVFK-GDERVVGLVGKVVDDA 81
Query: 449 FSRL 460
F ++
Sbjct: 82 FDKV 85
>At5g50950.2 68418.m06319 fumarate hydratase, putative / fumarase,
putative similar to SP|P55250 Fumarate hydratase,
mitochondrial precursor (EC 4.2.1.2) (Fumarase)
{Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
Length = 499
Score = 28.3 bits (60), Expect = 3.5
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +1
Query: 10 LKDQKPGSLLQVGKMKFTLLFVLVIVTAVAADEEAGVR---SNGRPDLVIGTITSQDSLI 180
L + +PGS + GK+ T L +V A V SNG +L + +L+
Sbjct: 346 LPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTIGGSNGHFELNVFKPVIASALL 405
Query: 181 RSFRFNRPASPSSQSHFHRIAMAAGVRISAI 273
S R AS S + + R A RIS +
Sbjct: 406 HSIRLIADASASFEKNCVRGIEANRERISKL 436
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 236 GSLWPPAFAYLPSRPGKWGKPRTRLSG 316
G WP F L SRPG G P RL+G
Sbjct: 411 GLQWPGLFHILASRPG--GPPHVRLTG 435
>At4g33350.1 68417.m04741 chloroplast inner membrane import protein
Tic22, putative similar to Tic22 [Pisum sativum]
gi|3769671|gb|AAC64606
Length = 268
Score = 27.5 bits (58), Expect = 6.1
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 200 DQRRLVRSL-TSTGSL-WPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSI 352
D +R +L T SL PP FA + K G P T LS SLVA + + TS+
Sbjct: 34 DTKRFAETLATRRFSLPTPPPFASVSQ--SKSGTPTTTLSPSLVAKALAGTSV 84
>At3g01870.1 68416.m00132 hypothetical protein
Length = 583
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 233 TGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPETRAAEDSP 388
T +P A +PS G +GK R L G V + +TS + R E P
Sbjct: 56 TAFTFPSALPVIPSGGGNFGKGRIDLGGLEVIQVSISTSTSQRVWRTYEGGP 107
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 231 PQDR-YGRRRSHICHHGPGSGANPEPDYPGRWWRHRLQQRQS*GPKRAR 374
PQDR Y + RS+ P +G+ PGR H R+S P++ R
Sbjct: 179 PQDRRYEKERSY-SRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSPRKNR 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,745
Number of Sequences: 28952
Number of extensions: 264919
Number of successful extensions: 735
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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