Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p11f
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 32   0.35 
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         31   0.46 
SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)          28   5.7  
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)                      28   5.7  
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   7.5  
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            27   9.9  
SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                      27   9.9  
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)                         27   9.9  

>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = -3

Query: 318 PVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVA-ARLTTKLRKSLSLEVILPILK 142
           PV  T + CV P +R  L  +P   V+++  +RQL+V+ +    +L  S+   +     +
Sbjct: 77  PVTITPLVCVSPGSRQFLVSIPPTLVSVSSMSRQLLVSFSPAFHQLLASVLSTMRALFAR 136

Query: 141 ALALSVDLGSATSLVDTATIAVNTN 67
           AL L +D+ +     D +  +V +N
Sbjct: 137 ALQLVIDMATNPYKDDKSASSVESN 161


>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 303 LVNCVDPRTRTALTRLPAGAVNLTLRTRQLIV-AARLTTKLRKSLS 169
           L N V    R  L + P G +NL +RTRQLI  +  L T  R+++S
Sbjct: 12  LTNLVRDCVREELRKNPGGNINLLMRTRQLIANSPLLGTASREAVS 57


>SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
          Length = 576

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 22/87 (25%), Positives = 39/87 (44%)
 Frame = -3

Query: 291 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALSVDLGS 112
           V   + T    + A  V+  + T  L VAA + +K   ++ L V   ++     +V+LG 
Sbjct: 362 VSKASSTVELGVAATVVSKAISTVGLGVAATVVSKAISTVGLGVAATVVFNAISTVELGV 421

Query: 111 ATSLVDTATIAVNTNNRANFILQEICT 31
           A ++V  A+  V     A  + + I T
Sbjct: 422 AATVVSKASSTVELGVAATVVSKAIST 448


>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
          Length = 382

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 411 NAYSGR-LHANTRSFCFFVCTKNSFSP 488
           N  SGR   +++RSF F +C KN + P
Sbjct: 273 NTMSGRGYQSSSRSFLFTLCNKNGYRP 299


>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1321

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -3

Query: 333  KPTPPPVRRT-LVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLE 163
            +P PPP  +  L   VD       T L  G  N ++  RQL+  AR      K L ++
Sbjct: 991  QPQPPPGNQVQLKEAVDELPDGIETELAEGGSNFSVGQRQLVCLARAILSHNKILVID 1048


>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1531

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 170 DRLLRSFVVSRAATINWRVLNV 235
           D LLR+FV S+A   NW + +V
Sbjct: 630 DALLRAFVFSKAQDTNWSLFSV 651


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 111 ATSLVDTATIAVNTNNRANFILQEI 37
           ATS++DT TIA+N    A F+++ I
Sbjct: 365 ATSIIDTKTIALNLLEIARFLVEFI 389


>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 327 TPPPVRRTLVNCVDPRTRTALTRL-PAGAVNLTLRTRQLIVAARLTTKLRKSL 172
           TPPP  R L+    PRT T    L P G +N+T+        AR   + RKSL
Sbjct: 172 TPPPWLR-LLPAPYPRTPTTTCALVPVGTINITVSENN----ARSLRRKRKSL 219


>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
          Length = 1329

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 432 VNVQNMHF*RPQICTVKKNALRGAFTN*RFTKVKPTPPPVRRTLVNCVDPRTRTALTRL 256
           +NV   H   P +    KN L+ A       KV+      R T+   +DPRTR  + +L
Sbjct: 138 INVDKYH--GPPLPNTAKNVLKEANRKKDNEKVRSKDKADRATVEQVLDPRTRMIIFKL 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003,688
Number of Sequences: 59808
Number of extensions: 280655
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)