Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p11f
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    29   1.5  
At5g28430.1 68418.m03453 hypothetical protein                          27   6.1  
At4g27010.1 68417.m03885 expressed protein  ; expression support...    27   8.1  

>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 331  LHFRESSVCERAAKSIFFYRTNLGTLKMHILDVYMQIHE 447
            +H  ESS+ E  ++    Y  NL +L M  LD   +IHE
Sbjct: 1554 IHTLESSLREEISRHAPLYGANLESLSMKELDTIARIHE 1592


>At5g28430.1 68418.m03453 hypothetical protein
          Length = 486

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 24/86 (27%), Positives = 33/86 (38%)
 Frame = -2

Query: 484 ENEFFVQTKKQKLRVFACKRPEYAFLASPNLYGKKKCSSRRVHKLKIHXXXXXXXXXXXD 305
           E E  ++  +QK    A KR +      P+  G   C+ R +  L+              
Sbjct: 118 ETEDILRLNEQKAFEKAEKRKKKKKAVMPDPPGSSLCTERSLSDLRARFGLGAVTLRVPS 177

Query: 304 PCELCRSSDADSPDASTGRRRESHVE 227
           P E      ADSP A T RRR  + E
Sbjct: 178 PEER-----ADSPPAVTRRRRRKYAE 198


>At4g27010.1 68417.m03885 expressed protein  ; expression supported
           by MPSS
          Length = 2535

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 344 NLQFVNAPRRAFFFTVQIWGR*KCIFWTFTCKYTKFLFFC 463
           N++  ++P    FF V+     KCI+  FT    +FL FC
Sbjct: 358 NVEDFSSPSWLVFFRVR-----KCIYLYFTASTVQFLLFC 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,987
Number of Sequences: 28952
Number of extensions: 188160
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)