Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p10r
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    73   4e-14
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.1  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   2.8  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.8  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    25   8.4  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   8.4  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 66/249 (26%), Positives = 100/249 (40%), Gaps = 15/249 (6%)
 Frame = -3

Query: 704  KRKLERDIEVEXGDD--YVLDLKKNYTEIPEDERYDVIPEIWEGHNIADYIDPDIFXXXX 531
            +R L RDIE   G    Y ++L+  Y       +YD +PE+ +G N+AD++DP+I     
Sbjct: 395  RRILARDIEAANGGAGVYNVELRDKYILQDPSWKYDRMPELLDGKNVADFVDPEIEAKLL 454

Query: 530  XXXXXXXXXXAGGMYAAPKIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPR 351
                        G Y + +   D    E+ E A +IR K  +    +R  K   +PV+PR
Sbjct: 455  ALDEEEERLEREGYYDSDQEIEDADEEEVLEKASRIREKNKLTMLAARQKKIKNRPVLPR 514

Query: 350  TSRAKTKQRSTSKLRK------DMEKLGVDMSETGDAH-FTXXXXXXXXXXXXXXXXXXX 192
            T+  +T     S L+        +E+     + T  A+                      
Sbjct: 515  TAGIRTLDELQSSLQSAGLPSDSIEERARSRARTAAANEMADGSGVDLLMNEGEEIRSKS 574

Query: 191  REPSNQP------VADPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGK 30
              P +Q       V     R    R+A      + + M    E+DR +    PKHL +GK
Sbjct: 575  IAPRSQSNRRESGVHAEGARSYADRLARVKQIHRNR-MARASESDRHVIAAKPKHLLSGK 633

Query: 29   RGVGKTDRR 3
            RG GKT RR
Sbjct: 634  RGNGKTQRR 642


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 395 ESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKL 288
           +S++   S KP +PRTS + +   S + LRK   +L
Sbjct: 147 QSKVTTASLKPNIPRTSMSSSPTASRTSLRKGAGEL 182


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -3

Query: 437 LARQIRNKKA----ILKDESRLVKQSTKPVMPRTSRAKT---KQRSTSKLRKDMEKLGVD 279
           L +  ++KKA    +  D S+     TK   P+ S+ KT   +Q + S   +  EKL  D
Sbjct: 528 LTKASKSKKAKASKLANDTSKNANGETKST-PKKSKKKTSKAQQEANSTTAEGKEKLSGD 586

Query: 278 MSETGDA 258
            +ETG++
Sbjct: 587 STETGNS 593


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 473 IELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVM-PRTSRAKTKQRSTSKL 309
           I LDD++    +   + RN+      +  LV  S K    P+TS   TK R+ SKL
Sbjct: 139 IILDDSLHTNSKKLGKTRNEVKEESQKRELVSNSIKEATSPKTSSILTKPRNPSKL 194


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 470 ELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMP 354
           +LD+   E+ ELA ++ +   ++   S L  QS   ++P
Sbjct: 147 DLDEVPTELNELANEVVDVDDVVSPSSELNAQSVNNILP 185


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 265 PVSDMSTPSFSMSFLSLEVDLCLVLAREVRGITGFVDCF 381
           P+   STP   +S LS ++DL    A +  G+T F D F
Sbjct: 144 PLEIYSTP---VSVLSSQIDLLRRFATDSDGLTPFTDVF 179


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 153 ARESKEDGARGHRQEDQEDGPQ-GRGGPVHRHQ-DAEASVRWKTWGRQDGPEI 1
           A E +E+     ++ED+ED  + G G  +     D EASV   T  + +  E+
Sbjct: 340 AEEEEEEEQEEEQEEDEEDEEEVGAGSDIKGFDADKEASVARATINKYEDDEV 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,412
Number of Sequences: 5004
Number of extensions: 35205
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)