Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p10r
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50920.1 68414.m05725 GTP-binding protein-related similar to ...    87   9e-18
At1g10300.1 68414.m01160 GTP-binding protein-related contains si...    76   3e-14
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    33   0.26 
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    29   2.4  
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ...    28   7.3  
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ...    28   7.3  
At5g46220.1 68418.m05688 expressed protein contains Pfam profile...    28   7.3  
At3g51290.1 68416.m05614 proline-rich family protein                   28   7.3  
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot...    28   7.3  
At2g21800.1 68415.m02591 expressed protein                             28   7.3  
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein...    27   9.7  
At5g01840.1 68418.m00103 ovate family protein 59% similar to ova...    27   9.7  
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit...    27   9.7  

>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
            GTP-binding protein SP:Q99ME9 from [Mus musculus]
          Length = 671

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 79/268 (29%), Positives = 123/268 (45%), Gaps = 34/268 (12%)
 Frame = -3

Query: 704  KRKLERDIEVEXGDD--YVLDLKKNYTEIPEDERYDVIPEIWEGHNIADYIDPDIFXXXX 531
            KRK E+D+E E G    Y   LKKNY    ++ + D++PEI +GHN+AD+IDPDI     
Sbjct: 404  KRKTEKDLEEENGGAGVYSASLKKNYILQHDEWKEDIMPEILDGHNVADFIDPDILQRLA 463

Query: 530  XXXXXXXXXXAGGMYAAPKIEL----DDTVREIRELARQ----IRN---KKAILKDESRL 384
                      AG   A  ++++    D+ ++++ E+ ++    I+N   KK + ++ S +
Sbjct: 464  ELEREEGIREAGVEEADMEMDIEKLSDEQLKQLSEIRKKKAILIKNHRLKKTVAQNRSTV 523

Query: 383  VKQSTKPVMPRTSR--------------AKTKQRSTSKLRKD--MEKLGVDMSETGDAHF 252
             ++  K     T R              A  + RS S+ RK    E  G D  +  D   
Sbjct: 524  PRKFDKDKKYTTKRMGRELSAMGLDPSSAMDRARSKSRGRKRDRSEDAGNDAMDVDDEQQ 583

Query: 251  TXXXXXXXXXXXXXXXXXXXREP-SNQPVADPIMRVKVKRMAHAAIA----KKTKKMGLK 87
            +                     P +++ V     +   ++++   I+    KK  K   +
Sbjct: 584  SNKKQRVRSKSRAMSISRSQSRPPAHEVVPGEGFKDSTQKLSAIKISNKSHKKRDKNARR 643

Query: 86   GEADRFIGTKMPKHLFAGKRGVGKTDRR 3
            GEADR I T  PKHLF+GKRG GKTDRR
Sbjct: 644  GEADRVIPTLRPKHLFSGKRGKGKTDRR 671


>At1g10300.1 68414.m01160 GTP-binding protein-related contains
           similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
           from [Homo sapiens];
          Length = 687

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
 Frame = -3

Query: 713 ENRKRKLERDIEVEXGDD--YVLDLKKNYTEIPEDERYDVIPEIWEGHNIADYIDPDIFX 540
           E  KRK E+D+E E G    Y   LKKNY    E+ + D+IPEI + HN+AD++D DI  
Sbjct: 415 EKEKRKTEKDLEDENGGAGVYSASLKKNYILAKEEWKDDIIPEICDCHNVADFVDSDILN 474

Query: 539 XXXXXXXXXXXXXAGGMYAAPKIELDD-TVREIRELARQIRNKKAILKDESRLVKQS--T 369
                        A       +IE ++ T +E  +LA  IR KKA+L +ESRL K +   
Sbjct: 475 RLEELTSEESLRKAEEEEVGFEIEGEELTEKEKNDLA-AIRKKKALLIEESRLKKSNAQN 533

Query: 368 KPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMS 273
           +  +PR    K K+ +  ++ +++  LG+D S
Sbjct: 534 RAAVPR-KFDKDKKFTRKRMGRELSSLGLDPS 564



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = -3

Query: 164 DPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 3
           D   ++K  ++ H +  +K  K   +GEADR I +  PKHLF+GKRG GK  RR
Sbjct: 635 DSSQKIKAIKIGHKS-HRKRDKAARRGEADRVIPSLKPKHLFSGKRGNGKNQRR 687


>At4g10710.1 68417.m01751 transcriptional regulator-related similar to
            chromatin-specific transcription elongation factor FACT
            140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = -2

Query: 480  AQDRAGRHREGDQGTGPADTQQEGHSQGRVSPGEAVHEAGDAAHLASQDQAEVHLQAQEG 301
            +   +G   E D+G  P+D + E  S+   S  E++ E+ D       ++ +   +++E 
Sbjct: 957  SDSESGGSEESDKGYEPSDVEVESESEDEASESESLVESDD------DEEEDSEQESEEE 1010

Query: 300  HGETW 286
             G+TW
Sbjct: 1011 KGKTW 1015


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/69 (21%), Positives = 37/69 (53%)
 Frame = -3

Query: 476 KIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDM 297
           K+++ +    ++++  ++ NK+ +LKD  +L  Q +     R++  K +QR  + L ++ 
Sbjct: 239 KVQMLELETSVQKVDAEVHNKEMMLKDLRKLQDQVSIKTAERSTLFKEQQRQYAALPEEN 298

Query: 296 EKLGVDMSE 270
           E    ++ E
Sbjct: 299 EDTIEELKE 307


>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 765

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 476 KIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRS-TSKLRKD 300
           K +LD   RE+ E A +  ++ + ++ E    +Q     +      + + RS  +KLR  
Sbjct: 176 KDDLDARFREVNETAERASSQHSSMQQELERTRQQANEALKAMDAERQQLRSANNKLRDT 235

Query: 299 MEKL 288
           +E+L
Sbjct: 236 IEEL 239


>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 788

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 476 KIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRS-TSKLRKD 300
           K +LD   RE+ E A +  ++ + ++ E    +Q     +      + + RS  +KLR  
Sbjct: 176 KDDLDARFREVNETAERASSQHSSMQQELERTRQQANEALKAMDAERQQLRSANNKLRDT 235

Query: 299 MEKL 288
           +E+L
Sbjct: 236 IEEL 239


>At5g46220.1 68418.m05688 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 465

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 72  VHRHQDAEASVRWKTWGRQDGPEI 1
           V+  ++A A+ RWK WG  DG  I
Sbjct: 299 VNTMEEAMATARWKKWGDVDGLRI 322


>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = -3

Query: 443 RELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETG 264
           ++L ++++  ++I  D  + V+Q  +  M R    KT+     K +KD+EKL   +S + 
Sbjct: 301 KKLYQEVKYAESIKMDHEKKVEQVRRLEMKRAEYVKTE-----KAKKDVEKLESQLSVSS 355

Query: 263 DA 258
            A
Sbjct: 356 QA 357


>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 661

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 470 ELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAK--TKQRSTS 315
           EL++  + I++  ++  +K +      RLVK   K ++PR S AK  T Q S S
Sbjct: 579 ELEEEFQSIKQEMKKRVSKSSSSMSSPRLVKLGCKFLLPRASDAKNDTVQNSVS 632


>At2g21800.1 68415.m02591 expressed protein
          Length = 475

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = -3

Query: 473 IELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDME 294
           IE+D    +      ++  KK  +  +S  +   + P    +   KT+     KL+K+ E
Sbjct: 151 IEVDSDHEKEDTGVEKMGRKKQTITSKSTSLSADSLPKKKMSKDEKTRAAEEKKLQKEQE 210

Query: 293 KLGVDMSETGDA 258
           KL    S+  DA
Sbjct: 211 KLQKAASKAEDA 222


>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 349

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = -2

Query: 450 GDQGTGPADTQQEGHSQGR---VSPGEAVHEAGDAAHLASQDQAEVHLQAQEGHGETWRG 280
           GD G GP++   +   + R   +   E   E  DA     +D+ E   Q      E  RG
Sbjct: 9   GDDGEGPSNNNHQSRKRQRLPSIDENEEDAETSDAGSSGEEDEDETQNQGMRPESED-RG 67

Query: 279 HVGD 268
              D
Sbjct: 68  STSD 71


>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 270

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 494 RQPRAVPRPSPTLPVYQRCPGRYSRRCCVPPRSP 595
           ++  AVP P+ T P+  R P R S     PP  P
Sbjct: 43  KKHHAVPTPTSTTPLSPRPPRRPSHSSKAPPSHP 76


>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
           putative Strong similarity to gb|Y18349 U2 snRNP
           auxiliary factor, small subunit from Oryza sativa. ESTs
           gb|AA586295 and gb|AA597332 come from this gene
          Length = 296

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 174 AGGRPHHARESKE-DGARGHRQEDQEDGPQGRGGPVHRHQDAEASVRWKTWGRQ 16
           +G R     E +E DG+RG RQ   + G    GG   R    E   R + W R+
Sbjct: 237 SGKRSSERSERQERDGSRGRRQASPKRGGSPGGG---REGSEERRARIEQWNRE 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,820,886
Number of Sequences: 28952
Number of extensions: 216127
Number of successful extensions: 934
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)