Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p10f
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 250 1e-67
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 29 0.49
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.5
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 27 2.6
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 3.5
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 3.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 6.1
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 25 8.0
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 25 8.0
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 250 bits (612), Expect = 1e-67
Identities = 109/161 (67%), Positives = 139/161 (86%)
Frame = +1
Query: 94 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 273
FK I +P F+D++LS+TQRKTPTV+ +KISRIRGFY RKVK+TQ ++L I
Sbjct: 6 FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65
Query: 274 IQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYR 453
+QEFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYR
Sbjct: 66 LQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYR 125
Query: 454 CKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDP 576
CKQLKRAALGRMATI+KRQ ++L +LEQVRQHL+RLP+IDP
Sbjct: 126 CKQLKRAALGRMATIIKRQKSSLEFLEQVRQHLSRLPAIDP 166
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 29.1 bits (62), Expect = 0.49
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +1
Query: 49 DTKIALN*NKMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 228
+TK+ LN ++S+ FKK + A D +K + P V+++H F +
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351
Query: 229 VKYTQQNFHDRLSRI 273
++ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 100 KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 216
KI VV + + + S+ QRK +++ KH I + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 216 KPTYS*YFIMLVNDCRSFPLCFR*N 142
+PTY+ YFI L++D R C+ N
Sbjct: 95 RPTYTHYFIRLLHDKRLLQKCYTQN 119
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 3.5
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +1
Query: 76 KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIR-KVKYTQQNF 252
K++ FK IA + F+D +S R T + +++ GF +K + F
Sbjct: 547 KINTTTFKTIANNKSVDAFLDDCVSFFSRPEMT---QDSQLNASSGFLTNFSLKDSTDRF 603
Query: 253 HDRLS--RIIQEFPKLDDVHPFYADLMNVL 336
+ LS ++ + F K+DD + Y+D+ + L
Sbjct: 604 YKVLSYEKVSERFVKIDDSYITYSDIFSPL 633
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 3.5
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 196 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 375
+S IR R+ K + LSR I + KLD V PF +M +L D+ + + + L
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPF---VMTLLRDQ-YADVRISAL 492
Query: 376 NTARHLIDNV 405
T L+ NV
Sbjct: 493 ITITRLVSNV 502
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 99 KDCCSPYS*GLYRHNFIEN 155
K SPYS G Y++N IEN
Sbjct: 501 KSSSSPYSRGPYKYNRIEN 519
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 418 VRLLKYGDSLYRCKQLKRAALGRMATIMKRQG 513
+R + Y D+L+ K L LG+ T ++R+G
Sbjct: 421 LRHIDYDDTLHSAKSLFYEILGQNNTFLQREG 452
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 181 HKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 273
H+H+K+SR R YI+ N D +++I
Sbjct: 230 HQHWKVSRDRKQYIKNFHNESVNNVDLINKI 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,089
Number of Sequences: 5004
Number of extensions: 48842
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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