Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p10f
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 267 5e-72
07_01_0075 - 558829-560859 264 5e-71
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 39 0.003
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 30 1.5
08_02_1310 - 26037025-26038074 29 3.5
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 28 6.2
>06_01_0668 - 4882174-4884204
Length = 676
Score = 267 bits (654), Expect = 5e-72
Identities = 120/166 (72%), Positives = 144/166 (86%)
Frame = +1
Query: 79 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 258
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYSISRIRQFYMRKVKYTQSNFYE 60
Query: 259 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 438
+LS +I +FP+LDD+HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYG
Sbjct: 61 KLSTVIDDFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 439 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDP 576
DSLYRCK LK AALGRM T++KR +L YLEQ+RQH+ARLPSIDP
Sbjct: 121 DSLYRCKCLKVAALGRMCTVIKRISPSLAYLEQIRQHMARLPSIDP 166
>07_01_0075 - 558829-560859
Length = 676
Score = 264 bits (646), Expect = 5e-71
Identities = 119/166 (71%), Positives = 143/166 (86%)
Frame = +1
Query: 79 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 258
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYAISRIRQFYMRKVKYTQSNFYE 60
Query: 259 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 438
+LS +I +FP+LD +HPFY DL++VLY+KDHYKL LGQ+NTAR++I +AKDY+RLLKYG
Sbjct: 61 KLSTVIDDFPRLDGIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 439 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDP 576
DSLYRCK LK AALGRM T++KR +L YLEQ+RQH+ARLPSIDP
Sbjct: 121 DSLYRCKCLKVAALGRMCTVIKRISPSLAYLEQIRQHMARLPSIDP 166
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 39.1 bits (87), Expect = 0.003
Identities = 34/165 (20%), Positives = 75/165 (45%), Gaps = 3/165 (1%)
Frame = +1
Query: 94 FKKIAVVPTAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 270
F++I +V A D + K++ PT + K R +G +++ + L
Sbjct: 83 FQRIPMVMPATDILMSAQRKSRNVPPTKGIANIAKRERNKG--AKQLDALMKEISVPLRT 140
Query: 271 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLY 450
+ FPK D+HP+ L+ + + + +Y+ + +++ R I++V K + + SL
Sbjct: 141 YTENFPKRRDLHPYERSLIELTFGEGYYEKVIARVDALRKKINSVGKQHASVC--AKSLT 198
Query: 451 RCKQLKRAALGR--MATIMKRQGANLTYLEQVRQHLARLPSIDPY 579
+ + +R + GR + + + L + + L +P +DP+
Sbjct: 199 KREAEERLSEGRKKLEEAFEHGKWVIDDLVNIAKTLRSMPVVDPH 243
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +1
Query: 184 KHYK--ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYK 357
K YK +S G+Y+ KV + +S + FP +D P ++ N L+D+ K
Sbjct: 423 KRYKELLSDSEGYYVPKVIDELSSKKVLMSEFVPGFP-IDKTDPNWS---NFLFDEPTRK 478
Query: 358 LGLGQLNTARHLIDNVAKDYVRLL 429
L AR DY+R++
Sbjct: 479 FNLIDFGAARDFPKRFVDDYLRMV 502
>08_02_1310 - 26037025-26038074
Length = 349
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 328 NVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMA 492
++L + Y+LG +L + + L+DNV + V + Y C +LK+ L +A
Sbjct: 260 HLLAAAERYELGGLKLLSTKKLLDNVTPENVAGIIVCAETYGCPELKKKCLDYLA 314
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +1
Query: 205 IRGFYIRKVKYTQQNFHDRLSRIIQEFPKLD-DVHPFYADLMNVLYDKDHYKLGLGQLNT 381
+ Y+ +V+ ++ + LSR+ QEF +L +L V ++ LGQL+
Sbjct: 361 LEDLYLSQVQQRKET-EESLSRVQQEFEQLKIQQDEVTVELQRVNEQNENL---LGQLSD 416
Query: 382 ARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATIM 501
+R + + ++ +LL+ D+ R + R G+M +++
Sbjct: 417 SREHFEWLLSEHDQLLRERDNAVREVEELRQKRGQMLSVL 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,003
Number of Sequences: 37544
Number of extensions: 298560
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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