Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p10f
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   2e-18
SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09)                 29   2.1  
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         28   4.8  
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   6.3  
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  

>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 53/97 (54%), Positives = 59/97 (60%)
 Frame = +1

Query: 286 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQL 465
           P   DVHPFYADLMNVLYDKDHYKL LGQ+NTAR+LID +                C  +
Sbjct: 13  PTAKDVHPFYADLMNVLYDKDHYKLALGQINTARNLIDKM----------------CTIM 56

Query: 466 KRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDP 576
           K            RQ  +L YLEQVRQHL+RLPSIDP
Sbjct: 57  K------------RQNQSLQYLEQVRQHLSRLPSIDP 81



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 79  MSLYNFKKIAVVPTAKD 129
           M+ YNFKKI VVPTAKD
Sbjct: 1   MAHYNFKKITVVPTAKD 17


>SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09)
          Length = 242

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = +1

Query: 112 VPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPK 291
           V +A+DF+    S T R         +++ ++RG +I KV+   +N+   L + ++ +P+
Sbjct: 66  VISAEDFLKWAESNTSRAGTGKRQASHRVRKLRGAFI-KVEDQSRNYRP-LFKEMKSWPR 123

Query: 292 LD-DVHPFYADLMNVLYDKDHYKLGLGQLNTARHLI 396
           L+ D  P Y    +V   K   K    +   AR  +
Sbjct: 124 LNFDAPPGYGPFDDVTAPKTRAKSSSSEPRQARKCV 159


>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1061

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +1

Query: 358 LGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATIMKRQGANLTYLEQ 537
           LGLGQ+  AR  ++N ++ + ++LK     Y   ++  +     + ++KR+ A     + 
Sbjct: 277 LGLGQMYIARRDLNNASQCFEKVLKAMPGNYETMKILGSLYSPSSDLVKRELARQHLKKV 336

Query: 538 VRQH 549
             QH
Sbjct: 337 TEQH 340


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 167 LLQSFTSIIKYQEYVGFILEK*NIPSRTSTTDCPEL 274
           L++S+  IIK QE  GFI EK   PS  S  DC E+
Sbjct: 534 LMKSYDDIIKEQEARGFI-EK--APSTPSLNDCLEV 566


>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 305 WTSSNFGNS*IILDSRSWKFCWV 237
           W S N GNS ++  SRSW   W+
Sbjct: 793 WYSPNEGNSSLLRLSRSWPAVWI 815


>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 292 LDDVHPFYADLMNVLYDKDHYKLG---LGQLNTARHLI 396
           LDD   F  +L N L++++  KLG    G+L  A HL+
Sbjct: 483 LDDGRQFTTELFNTLHEEELAKLGGPSKGKLGQASHLL 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,821
Number of Sequences: 59808
Number of extensions: 354002
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)