Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p10f
(580 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ... 263 7e-71
At1g10300.1 68414.m01160 GTP-binding protein-related contains si... 244 3e-65
At3g23860.1 68416.m02999 GTP-binding protein-related low similar... 75 3e-14
At1g80770.1 68414.m09476 expressed protein 43 1e-04
At3g10830.1 68416.m01304 hypothetical protein 39 0.003
At3g09660.1 68416.m01145 minichromosome maintenance family prote... 33 0.18
At4g32500.1 68417.m04626 potassium channel protein, putative sim... 29 1.7
At4g01560.1 68417.m00202 brix domain-containing protein contains... 29 1.7
At3g15510.1 68416.m01966 no apical meristem (NAM) family protein... 28 3.9
At5g24430.1 68418.m02879 calcium-dependent protein kinase, putat... 27 9.0
At4g31500.1 68417.m04474 cytochrome P450 83B1 (CYP83B1) Identica... 27 9.0
>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
GTP-binding protein SP:Q99ME9 from [Mus musculus]
Length = 671
Score = 263 bits (644), Expect = 7e-71
Identities = 118/166 (71%), Positives = 143/166 (86%)
Frame = +1
Query: 79 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 258
M YNFK+I VVP K+F+DIILS+TQR+TPTVVHK YKI+R+R FY+RKVKYTQ NFH
Sbjct: 1 MVQYNFKRITVVPNGKEFVDIILSRTQRQTPTVVHKGYKINRLRQFYMRKVKYTQTNFHA 60
Query: 259 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 438
+LS II EFP+L+ +HPFY DL++VLY+KDHYKL LGQ+NTAR+LI ++KDYV+LLKYG
Sbjct: 61 KLSAIIDEFPRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYG 120
Query: 439 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDP 576
DSLYRCK LK AALGRM T++KR +L YLEQ+RQH+ARLPSIDP
Sbjct: 121 DSLYRCKCLKVAALGRMCTVLKRITPSLAYLEQIRQHMARLPSIDP 166
>At1g10300.1 68414.m01160 GTP-binding protein-related contains
similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
from [Homo sapiens];
Length = 687
Score = 244 bits (597), Expect = 3e-65
Identities = 110/166 (66%), Positives = 138/166 (83%)
Frame = +1
Query: 79 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 258
M YNFKKI VVP K F+DI+LS+TQR+TPTVVHK +I ++R FY+RKVK+T+ NF++
Sbjct: 30 MVKYNFKKITVVPNGKQFVDIVLSRTQRQTPTVVHKGDRICKLRSFYMRKVKFTESNFNE 89
Query: 259 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 438
+LS II EFP+L ++ PFY DL++VLY+KDHYKL LGQ+NTA++ I +A DYV+LLK+G
Sbjct: 90 KLSAIIDEFPRLKEIQPFYEDLLHVLYNKDHYKLALGQVNTAKNKISKIAMDYVKLLKHG 149
Query: 439 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDP 576
DSLYRCK LK AALGRM T+MK G +L YLEQVRQH+ARLPSIDP
Sbjct: 150 DSLYRCKCLKVAALGRMCTVMKGIGPSLAYLEQVRQHIARLPSIDP 195
>At3g23860.1 68416.m02999 GTP-binding protein-related low similarity
to SP|Q99ME9 Nucleolar GTP-binding protein 1 (Chronic
renal failure gene protein) {Mus musculus}
Length = 230
Score = 74.9 bits (176), Expect = 3e-14
Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Frame = +1
Query: 94 FKKI-AVVPTAKDFIDIILSKTQRKTPTVVHK---HYKISRIRGFYIRKVKYTQQNFHDR 261
FKKI AVVPT DF I + Q T++ H IS IR Y KV ++
Sbjct: 6 FKKISAVVPTELDFDRAIRFEYQIPNCTLIPDRVCHDDISDIRQKYAVKVMSAGTTLSNK 65
Query: 262 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG- 438
L+ ++ EFP + + P YA L++ Y+ HY + Q++ + L++ ++ +YV LL+
Sbjct: 66 LNDVLHEFPCVRHLDPVYASLLHQRYNMYHYDRAVRQVSVTQTLVNVMSFNYVDLLRKDD 125
Query: 439 --DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLA 555
DS +C+ L AL RM T K L L+QVR+ +A
Sbjct: 126 DCDSRDKCRSLGVTALARMLTFAKSCIPALNLLDQVREFMA 166
>At1g80770.1 68414.m09476 expressed protein
Length = 451
Score = 43.2 bits (97), Expect = 1e-04
Identities = 33/161 (20%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
Frame = +1
Query: 94 FKKIAVVPTAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 270
F+K+ +V + D L K++R PT + K R RG +++ + L
Sbjct: 92 FQKLPMVMPSIDLYASALRKSKRVQPTKGIANIAKRERNRG--AKQLDAFMKELALPLKG 149
Query: 271 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLY 450
++ FP+ +HP+ L+++ Y+ LG+++ R + +V K++ L S
Sbjct: 150 YMESFPRKKLLHPYERSLIDLTLGDGKYEEVLGKVDVLRKKVQSVGKEHASLCAKALSKK 209
Query: 451 RCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSID 573
++ + ++ + ++QG + L + + L +P +D
Sbjct: 210 EAEERLSEGVEKLELVFQQQGGAVDDLLTIAKVLRAMPVVD 250
>At3g10830.1 68416.m01304 hypothetical protein
Length = 147
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = +1
Query: 94 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHY------KISRIRGFYIRKVKYTQQNFH 255
FKK++V+ T KDF+D I+S + + + + K I + V+ + F
Sbjct: 27 FKKMSVLLTEKDFVDAIVSVSLKDLTRSLFVRFEAKACPKFDLIHKTSVETVRCVGKTFM 86
Query: 256 DRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 375
LS++ +EFP + HP L+ +D H L Q+
Sbjct: 87 HMLSKVSREFPPRNRTHP--GGLLYQRFDPTHLSLARQQV 124
>At3g09660.1 68416.m01145 minichromosome maintenance family protein
/ MCM family protein similar to SP|P49717 DNA
replication licensing factor MCM4 (CDC21 homolog) {Mus
musculus}; contains Pfam profile PF00493: MCM2/3/5
family
Length = 777
Score = 32.7 bits (71), Expect = 0.18
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Frame = +1
Query: 262 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLI----------DNVAK 411
LS +Q+F K+ D+ F+ +L +D+ K + +N A H + +NV K
Sbjct: 77 LSLDLQQFKKISDIENFFINL------EDNPKGVIPCMNAAVHKVLFDQWETNEFENVMK 130
Query: 412 DYVRLLKYGDSLYRCKQLKRAALGRMATI 498
VRL Y +S K L+ A +G++ T+
Sbjct: 131 INVRLHNYPESSISLKNLRAAYIGKLVTV 159
>At4g32500.1 68417.m04626 potassium channel protein, putative
similar to potassium channel [Solanum tuberosum]
gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 880
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 361 GLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMAT-IMKRQGANLTYLEQ 537
G+G + AR I A +++K DSL ++ LG +AT I+ R+GA + +
Sbjct: 808 GVGGVYPARVTISGEASSSGKVVKLPDSLEELIEIGEKKLGFVATKILSREGAEIDDIRI 867
Query: 538 VR 543
+R
Sbjct: 868 IR 869
>At4g01560.1 68417.m00202 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 343
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 76 KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTP 171
K Y+ KKI T KDF +I+ T R+ P
Sbjct: 159 KRGTYDLKKIVEYATKKDFTSLIVVHTNRREP 190
>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
(NAC2) identical to AtNAC2 [Arabidopsis thaliana]
GI:12060426; contains Pfam PF02365: No apical meristem
(NAM) domain; similar to jasmonic acid 2 GB:AAF04915
from [Lycopersicon esculentum]
Length = 364
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 432 IWRFVVSVQTAQTCGSGSHGHHHETARS*SYIPG 533
I+R + + +G H HHH +RS ++ PG
Sbjct: 197 IFRKIPPSLSMAAASTGLHQHHHNVSRSMNFFPG 230
>At5g24430.1 68418.m02879 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK1 [Nicotiana tabacum]
gi|16904222|gb|AAL30818
Length = 594
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 106 AVVPTAKDFIDIILSKTQRKTPT 174
++ PTAKDF+ +L+K RK T
Sbjct: 373 SISPTAKDFVKRLLNKDHRKRMT 395
>At4g31500.1 68417.m04474 cytochrome P450 83B1 (CYP83B1) Identical
to Cytochrome P450 (SP:O65782 )[Arabidopsis thaliana]
Length = 499
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 424 LLKYGDSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDP 576
L+KY +++ + + R+ +G + + NL YL+ V + RL + P
Sbjct: 315 LIKYPEAMKKAQDEVRSVIGDKGYVSEEDIPNLPYLKAVIKESLRLEPVIP 365
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,285,913
Number of Sequences: 28952
Number of extensions: 247997
Number of successful extensions: 574
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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