Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p07r
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49960.1 68418.m06186 expressed protein ; expression supporte...    32   0.33 
At4g05260.1 68417.m00795 ubiquitin family protein contains INTER...    30   1.3  
At2g28870.1 68415.m03509 expressed protein                             29   4.1  
At1g53840.1 68414.m06128 pectinesterase family protein contains ...    29   4.1  
At5g52400.1 68418.m06501 cytochrome P450 family protein similar ...    28   5.4  
At3g22170.1 68416.m02798 far-red impaired responsive protein, pu...    27   9.5  

>At5g49960.1 68418.m06186 expressed protein ; expression supported
           by MPSS
          Length = 824

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -3

Query: 253 CLDDACSHSYAYVFYAESIRQAVDGGNEFVGTACNSYEEARNLRCSGPRDAIFGGIEVKE 74
           CL   CS S+ YV +  S    ++  N  + T CNS  +   +  +  R  +F  + +  
Sbjct: 86  CLKFICSCSFTYVMFLRSKVSRLEAENIILLTRCNSSSDNNEMEETNSRAVVFFSVIITF 145

Query: 73  V-EMGIYIFLTNI 38
           V    +Y++L ++
Sbjct: 146 VLPFLLYMYLDDL 158


>At4g05260.1 68417.m00795 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 259

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 617 PVDGDYVYIFSGEVSGYDESVEVSSDSFTVIV 712
           P DGDY ++  G V   D+S E +S + T IV
Sbjct: 219 PQDGDYFFVHKGRVLNEDQSFEWNSVAHTDIV 250


>At2g28870.1 68415.m03509 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 444 EFLAAIPAMCPPRPSPTMRISSES*LKV 527
           + L+A+P +CPP P    R+ S S LKV
Sbjct: 93  QILSAMPRICPPAPRKPKRVPSRS-LKV 119


>At1g53840.1 68414.m06128 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 586

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = -1

Query: 315 VMTILWEISTFIPPAVAVKADAWTMPAPILTPMFSTPNLSGKQ*MEVMSSSELLAIATKK 136
           V+ ++  I   +   V  K    + P+P   P   TP+ S K    V    E    +  K
Sbjct: 36  VVVLIAVIIAAVVATVVHKNKNESTPSP---PPELTPSTSLKAICSVTRFPESCISSISK 92

Query: 135 LATSDALDPETPFSVELKL 79
           L +S+  DPET F + LK+
Sbjct: 93  LPSSNTTDPETLFKLSLKV 111


>At5g52400.1 68418.m06501 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) (cytochrome P450 lxxii
           hydroxylase) (ge10h) [Catharanthus roseus]
          Length = 519

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 270 VAVKADAWTMPAPILTPMFSTPNLSGKQ*MEVMSSSELL 154
           V V+ D WT    I+TP F+  NL     M V S S +L
Sbjct: 154 VMVEGDDWTRHRHIITPAFAPLNLKVMTNMMVESVSNML 192


>At3g22170.1 68416.m02798 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 839

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/73 (30%), Positives = 29/73 (39%)
 Frame = -3

Query: 412 DPSLHGWTHNPEILNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLDDACS 233
           D  L    HN E ++      V V   T   +G   P G+L  Y  G + +     +  S
Sbjct: 19  DRGLDNVLHNEEDMDIGKIEDVSVEVNTDDSVGMGVPTGELVEYTEGMNLEPLNGMEFES 78

Query: 232 HSYAYVFYAESIR 194
           H  AY FY E  R
Sbjct: 79  HGEAYSFYQEYSR 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,670
Number of Sequences: 28952
Number of extensions: 305784
Number of successful extensions: 876
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)