Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p07f
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      42   4e-04
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  39   0.002
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            35   0.053
SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)            29   2.6  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   4.6  

>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +1

Query: 97  FHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIPAHLAAE 276
           F LF R  P +       V  +  S++   +RT    H + E+ + ++   +  A L  +
Sbjct: 72  FQLFTRSHPHLVSIDDSDVKKLKASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKD 131

Query: 277 DVNVIAVDWSPGSK-LYTEGLANARQCG 357
           DVNV+  DW PG+  +Y +  AN R  G
Sbjct: 132 DVNVVITDWGPGADGMYWQATANTRLVG 159


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 12/158 (7%)
 Frame = +1

Query: 97  FHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNH-GETVAG------NFNAFVI 255
           F L+ R SP   + L   ++    + F+ +RRT+  IH   G T         N+  F +
Sbjct: 75  FMLYTRESPVQYQQLYEDMDITRDTHFNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPM 134

Query: 256 PAHLAAE-DVNVIAVDWSPGSKL-YTEGLANARQCGRLIAEFINILTTTFSYDSELIRIV 429
              L  E D NVI VDW  G+   +T  +AN R  G   A  + IL          + ++
Sbjct: 135 KNELLWEGDFNVIIVDWMRGAWFPFTRAVANTRLVGAQTARLLQILEERSGRKLAYVHVI 194

Query: 430 XXXXXXXXXXXXXR---NSNQPIPHIIALDPSLHGWTH 534
                        R      + I  I ALDP+   W H
Sbjct: 195 GFSFGAHVAGYVGRRMKKRGRMIDRITALDPAAM-WFH 231


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
 Frame = +1

Query: 259 AHLAAEDVNVIAVDWSPGSKL-YTEGLANARQCGRLIAEFINILTTTFSYDSELIRIVXX 435
           A +  ED NVI  DWS G+ + Y +  AN R  G  I E I  L            +V  
Sbjct: 635 ALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYLVGF 694

Query: 436 XXXXXXXXXXXR---NSNQPIPHIIALDP-SLHGWTHNPEI-LNPDDAN 567
                      R    + Q +  I  LDP S+H    + ++ L+P DA+
Sbjct: 695 SLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDAD 743


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
 Frame = +1

Query: 133 EPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIPAHLAAEDVNVIAVDWSPG 312
           +P  L+ NS   ++F   R+ +  IH   ++   ++   +    L  E +NVI VDW  G
Sbjct: 8   DPKRLARNS---TAFRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSG 64

Query: 313 S---KLYTEGLANARQCGRLIAEFINILTTTFSYDSELIRIV 429
           +    LY     N R  G  +AE I  +   F +D   + ++
Sbjct: 65  ADGLNLYHVAAGNTRVVGAQLAELITTIQRVFDFDLRRVHLI 106


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
 Frame = +1

Query: 103 LFHRGSPQVSEPLL-LSVNSIMTSSFSLARRTIFTIHNHGET--------VAGNFNAFVI 255
           L+ + SP   E L      +I  SSF   R T F +H +           + G +   + 
Sbjct: 57  LYTQASPDKYEVLSDADTATIEKSSFLPHRTTRFIVHGYAGLDSVDSIIDLKGWWGIRMK 116

Query: 256 PAHLAAEDVNVIAVDWSPGSKL-YTEGLANARQCGRLIAEFINIL 387
              L   D NVI VDW  G+K+ Y   +AN R  G  +A F+  +
Sbjct: 117 DELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTI 161


>SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)
          Length = 554

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 474 ISSCDTSDVSTETKSDNANKLGIVAEGCSQDIDEFSN*STALTS 343
           ++S  T+  +T TK++        A   S   +EF++ STALT+
Sbjct: 484 VTSASTTATTTSTKTNEVTSASTTATTTSTKTNEFTSASTALTT 527


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 91  VVFH----LFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETV 228
           VV+H    +FH+  P V++P+L S +S +    ++A+     +H  G  +
Sbjct: 68  VVYHQPPIVFHQPPPAVNQPMLYSHDSFVMHPAAVAQHVNSVVHEGGRYI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,730
Number of Sequences: 59808
Number of extensions: 314362
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)