Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p07f
(567 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 38 0.005
At4g05260.1 68417.m00795 ubiquitin family protein contains INTER... 30 0.94
At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa... 29 2.2
At2g28870.1 68415.m03509 expressed protein 29 2.9
At2g35010.1 68415.m04295 thioredoxin family protein similar to S... 28 3.8
At1g54430.1 68414.m06209 hypothetical protein 28 5.0
At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger) fa... 27 6.6
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 27 8.7
At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger) fa... 27 8.7
>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
very low similarity to SP|Q40863 Late embryogenesis
abundant protein EMB8 from Picea glauca; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 1805
Score = 37.9 bits (84), Expect = 0.005
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = -1
Query: 471 SSCDTSDVSTETKSDNANKLGIVAEGCSQDIDEFSN*STALTSVGQTLGV*FRSRTPVDG 292
S+ D S++++E KSD+AN+ I AE + + D+ S T GQ S+ G
Sbjct: 758 SAADDSEMASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQVE----TSKNDEKG 813
Query: 291 DYVYIFSGEVS-GYDESVEVSSDSFTVIVYREDGAASEGERRSHNRVDRQQQR 136
+ V+ G++++ + +DS D S+G++ V QQQR
Sbjct: 814 APIANEKSSVADGFEKASDAKNDSTNPQPVGADDITSDGDKVDQGVVLAQQQR 866
>At4g05260.1 68417.m00795 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 259
Score = 30.3 bits (65), Expect = 0.94
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 303 PVDGDYVYIFSGEVSGYDESVEVSSDSFTVIV 208
P DGDY ++ G V D+S E +S + T IV
Sbjct: 219 PQDGDYFFVHKGRVLNEDQSFEWNSVAHTDIV 250
>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 146
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 220 HRDCVS*RWCGERGRT 173
HRDC+ RWC E+G T
Sbjct: 46 HRDCIQ-RWCDEKGNT 60
>At2g28870.1 68415.m03509 expressed protein
Length = 156
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 476 EFLAAIPAMCPPRPSPTMRISSES*LKV 393
+ L+A+P +CPP P R+ S S LKV
Sbjct: 93 QILSAMPRICPPAPRKPKRVPSRS-LKV 119
>At2g35010.1 68415.m04295 thioredoxin family protein similar to
SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa};
contains Pfam profile: PF00085 Thioredoxin
Length = 194
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 136 PLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIP 258
PL+L+ NSI S +AR ++FT N G ++ NF+ +P
Sbjct: 34 PLVLAPNSI---SSLIARNSLFTASNIGPSIDFNFSNTSLP 71
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 64 YSFNLGERDVVFHLFHRGSPQVSE--PLLLSV 153
+S N+GERDV+ H G Q+S+ PL +++
Sbjct: 491 FSKNIGERDVIVHHKSSGLQQISDLHPLFMTL 522
>At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger)
family protein contains InterPro Entry IPR001841
Zn-finger, RING
Length = 218
Score = 27.5 bits (58), Expect = 6.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 220 HRDCVS*RWCGERGRT 173
HR+C+ RWC E+G T
Sbjct: 46 HRNCIQ-RWCNEKGNT 60
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 243 VEVSSDSFTVIVYREDGAASEGERRSHNRVDRQQQRFTD 127
VE SS + V+V DG + H R+ Q+Q+ D
Sbjct: 271 VEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVD 309
>At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 220 HRDCVS*RWCGERGRT 173
HR CV RWC E+G T
Sbjct: 83 HRKCVQ-RWCNEKGNT 97
>At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 220 HRDCVS*RWCGERGRT 173
HR CV RWC E+G T
Sbjct: 83 HRKCVQ-RWCNEKGNT 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,289,200
Number of Sequences: 28952
Number of extensions: 216270
Number of successful extensions: 618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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