Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p06r
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 34 0.13
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 33 0.17
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 33 0.29
11_04_0153 + 14159820-14162417 30 1.6
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984... 30 2.1
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 29 4.8
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325... 28 6.3
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 28 6.3
02_02_0476 - 10751647-10753323 28 6.3
02_02_0310 - 8842286-8843314 28 6.3
08_02_0707 - 20212190-20214592 28 8.4
06_03_0612 + 22735613-22735643,22735747-22735849,22737154-227375... 28 8.4
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 33.9 bits (74), Expect = 0.13
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = -1
Query: 707 LYINAGGVTVSFFEWLKNL 651
+Y N+GGV VS+FEW++N+
Sbjct: 334 IYANSGGVVVSYFEWVQNI 352
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 33.5 bits (73), Expect = 0.17
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = -1
Query: 707 LYINAGGVTVSFFEWLKNL 651
+Y N+GGV VS+FEW++N+
Sbjct: 334 IYANSGGVIVSYFEWVQNI 352
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/16 (68%), Positives = 16/16 (100%)
Frame = -1
Query: 698 NAGGVTVSFFEWLKNL 651
N+GGVTVS+FEW++N+
Sbjct: 369 NSGGVTVSYFEWVQNI 384
>11_04_0153 + 14159820-14162417
Length = 865
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 551 RVGGRIPVTPSESFQKRISGASEKDIVHSGL 459
R+GG I P ESFQ+R ++ D+ G+
Sbjct: 309 RIGGTIGYLPPESFQRRAMATAKSDVFSFGI 339
>07_03_0739 -
21096684-21096742,21096822-21097076,21097206-21098498,
21098616-21098688
Length = 559
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = -1
Query: 644 VSYGRLTFKYERESNYHLLESVQESLERR-FGRVGGRIPVTPSESFQKRISGASEKDIVH 468
V+Y L F E ++ Y+ + V S ER + GGR+P+ SE SG +
Sbjct: 237 VTYYSL-FDAELDAVYYAINKVSGSNERASLAQAGGRVPIRVSE------SGHPSGGRIR 289
Query: 467 SGL-DYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKI 351
SG+ + + + A A +N GL R A+++E +
Sbjct: 290 SGVTEANADGDSVATKANAQAYNNGLAKRVLFGASNMEDV 329
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 399 EVEPHGCLHDGPSGSLHGVVESGVHDVLLGGAGDS 503
E + H L DG SL V+ GVHDV LG DS
Sbjct: 999 EEDDHEVLQDG---SLPICVQDGVHDVKLGDTDDS 1030
>07_03_1144 +
24331104-24331292,24331387-24331611,24332133-24332521,
24332762-24332856,24333300-24333673
Length = 423
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +3
Query: 297 YSVSELLE----S*TGIGIRGEYLFDGVRIRGCPQI*TEVEP-HGCLHDGPSGS 443
Y V E LE S G R + DG R+R C + T EP G +H S S
Sbjct: 292 YGVEETLEAHSDSTAGFTDRHQKRSDGGRVRACAAVATGAEPVQGVVHSSSSSS 345
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 466 PDSTTPWRDPLGPS*RQP 413
P +TPWRDP S RQP
Sbjct: 10 PHDSTPWRDPSRASSRQP 27
>02_02_0476 - 10751647-10753323
Length = 558
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 471 HDVLLGGAGDSLLEGL*GSDGDAASHATEPPL 566
H+V+ G G L+ G AA+ ATEPP+
Sbjct: 313 HEVMFTGLGGGLVVSDNGEHASAAAPATEPPV 344
>02_02_0310 - 8842286-8843314
Length = 342
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = -3
Query: 507 EENLRRLREGHRALRTR-LHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHH 343
E+ + RL G R+ HH + ED HE R+ HR+ HH
Sbjct: 174 EDEMARLHHGRRSHHHHHRHHHHHHDENEEDEHEQADEASPAVERLISFHRRRHHH 229
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 453 HHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVC 337
HHG+ HH D H S + + E K+ H C
Sbjct: 542 HHGDANKSHHHDHHHDSSNEESHHNSLTENSCKENHSHC 580
>06_03_0612 +
22735613-22735643,22735747-22735849,22737154-22737511,
22737592-22738033,22738146-22738189,22738293-22738340
Length = 341
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 561 PLERLLDRFQQMVVRFPLVFECQTSVRHVIEVLEPLEE 674
PL+R+ D + VVR L E + V+ +++V +E+
Sbjct: 165 PLDRMRDELKAYVVRHGLATELEEPVKDILQVYNIVED 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,274,479
Number of Sequences: 37544
Number of extensions: 384782
Number of successful extensions: 937
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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