Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11p06r
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 203 1e-52
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8) 31 0.69
SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10) 31 1.2
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3) 29 4.9
SB_32093| Best HMM Match : MCM (HMM E-Value=0.004) 28 6.5
SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_29837| Best HMM Match : MobC (HMM E-Value=6.8) 28 8.5
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 203 bits (495), Expect = 1e-52
Identities = 93/130 (71%), Positives = 114/130 (87%)
Frame = -1
Query: 707 LYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNYHLLESVQESLERRFGRVGGRIPV 528
LY+NAGGVTVS+FEWLKN+NHVS+GRLT+KYE+ESNYHLLESVQ+SLER FG IP+
Sbjct: 391 LYLNAGGVTVSYFEWLKNINHVSFGRLTWKYEKESNYHLLESVQKSLERHFGG-SSHIPI 449
Query: 527 TPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKIF 348
TPSE+FQ++ISGASE+DIVHSGL++TMERSA+ IM+ A +NLGLD+RTAAY +IEK++
Sbjct: 450 TPSEAFQEQISGASERDIVHSGLEFTMERSAKQIMRCAEEYNLGLDIRTAAYIVAIEKVY 509
Query: 347 TTYADAGLAF 318
TYA AG F
Sbjct: 510 NTYAVAGFTF 519
>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
Length = 410
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 107 FTYKRHCNHSIFLCVEIMAFYLNLSETLLN 18
FT H S F+C++I+ FY ++S+ LLN
Sbjct: 70 FTSTEHKTASNFICLDIVEFYPSISQELLN 99
>SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10)
Length = 262
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 379 PRMRTPSKRYSPRMPMPV*LSNNSLTEYQF*SIVCIVFSEE 257
P+ RTP KR P P LSN T+ + +++ + EE
Sbjct: 103 PKKRTPEKRIQKSDPSPGILSNEDFTDLDYNTMMASLIGEE 143
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 402 PRFRS--EDSRVCELHRKDIHHVCRCRSSFLIIHLLN 298
P FR+ E++ VC++H ++ C C +F IH N
Sbjct: 2050 PCFRNPCENNGVCKIHPVHFNYTCNCTDTFTGIHCEN 2086
>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1360
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 107 FTYKRHCNHSIFLCVEIMAFYLNLSETLLN 18
FT ++ S F+C +I+ FY ++S+ LLN
Sbjct: 1131 FTSTKNKTASNFICFDIVEFYPSISQELLN 1160
>SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)
Length = 466
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 107 FTYKRHCNHSIFLCVEIMAFYLNLSETLLN 18
FT ++ S F+C +I+ FY ++S+ LLN
Sbjct: 237 FTSTKNKTASNFICFDIVEFYPSISQELLN 266
>SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)
Length = 348
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 414 GCLHDGPSGSLHGVVESGVHDVLLGGAGDSLLEGL*GSDGDAASHATEPPLERLLDRFQQ 593
GC + +G +HG + D G GD ++ G D D ++ +PPL +L ++ Q
Sbjct: 168 GCDDNDDNGEIHGDTQKYTDDDSGGDDGDGGVDDGNGGDYDDDNN-DDPPLSSVLRQYYQ 226
>SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 414 GCLHDGPSGSLHGVVESGVHDVLLGGAGDSLLEGL*GSDGDAASHATEPPLERLLDRFQQ 593
GC + +G +HG + D G GD ++ G D D ++ +PPL +L ++ Q
Sbjct: 183 GCDDNDDNGEIHGDTQKYTDDDSGGDDGDGGVDDGNGGDYDDDNN-DDPPLSSVLRQYYQ 241
>SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)
Length = 327
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 80 SIFLCVEIMAFYLNLSETLLN 18
S F+C +++ FY ++SE LLN
Sbjct: 127 SAFICFDVVEFYPSISEDLLN 147
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 492 RLREGHRALRTRLHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKD 352
R R+G + R + H R HE+ + + RFR D + +L R+D
Sbjct: 330 RHRDGRESWREKPKH---RRRSHEEREQRRDRFRDRDEKGSDLERRD 373
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 27.9 bits (59), Expect = 8.5
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -3
Query: 531 RHSLRVLPEENLRRLREGHRALRTRLH-HGEIR*GHHEDSHEV-QPRFRSEDSRVCELHR 358
R LR + + RL + H A R RLH E D HEV + R R +C
Sbjct: 831 RKRLRDRHKASRIRLHDKHEASRNRLHDRHEASRNRLRDRHEVSRKRLRDRHKALCN-RL 889
Query: 357 KDIHHVCRCR 328
D H V R R
Sbjct: 890 CDRHEVSRKR 899
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,062,685
Number of Sequences: 59808
Number of extensions: 440172
Number of successful extensions: 1058
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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