Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p06r
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi...    37   0.011
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi...    36   0.026
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil...    36   0.026
At5g20370.1 68418.m02423 serine-rich protein-related contains so...    30   1.7  
At4g28080.1 68417.m04027 expressed protein                             29   3.0  
At1g02120.1 68414.m00138 GRAM domain-containing protein-related ...    29   4.0  
At2g32800.1 68415.m04015 protein kinase family protein contains ...    28   7.0  
At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608...    27   9.2  
At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608...    27   9.2  

>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
           to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
           thaliana] SWISS-PROT:Q38946
          Length = 411

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = -1

Query: 707 LYINAGGVTVSFFEWLKNL 651
           +Y NAGGVTVS+FEW++N+
Sbjct: 334 IYANAGGVTVSYFEWVQNI 352


>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = -1

Query: 707 LYINAGGVTVSFFEWLKNL 651
           +Y N+GGVTVS+FEW++N+
Sbjct: 334 IYANSGGVTVSYFEWVQNI 352


>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = -1

Query: 707 LYINAGGVTVSFFEWLKNL 651
           +Y N+GGVTVS+FEW++N+
Sbjct: 334 IYANSGGVTVSYFEWVQNI 352


>At5g20370.1 68418.m02423 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 175

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -1

Query: 515 SFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKIFTTYA 336
           SF +R+     K +  S    T++R+ R      +R N+GL+LR  A  NS+ KI +  A
Sbjct: 85  SFHRRLEHEKSKTLASS----TVKRNNRG--DNTIRVNVGLNLRKLALMNSLAKIGSVEA 138

Query: 335 D 333
           +
Sbjct: 139 E 139


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 188 VVISLYCKMKEINIGLNLRST---LEFLRKYYTDNTL 289
           V  + Y ++KE   G +L+S    +E  RKYYTD  L
Sbjct: 502 VTETAYQRLKESETGFHLKSPKELIEMARKYYTDTAL 538


>At1g02120.1 68414.m00138 GRAM domain-containing protein-related
           contains low similarity to PF02893: GRAM domain
          Length = 556

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 516 VLPEENLRRLREGHRALRTRLHHGE 442
           ++ E+ L+R+R+ H AL+ + HH E
Sbjct: 524 MMVEDRLQRMRQDHAALKAQFHHLE 548


>At2g32800.1 68415.m04015 protein kinase family protein contains
           dual protein kinase domains, Pfam:PF00069
          Length = 851

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 614 ERESNYHLLESVQESLERRFG--RVGGRIPVTPSESFQKRISGASEKDIVHSGL 459
           E +S+Y  + S +    R     R+GG I   P ESF+K+    ++ D+   G+
Sbjct: 281 EHDSSYDSVSSFRNHQFRVADSTRIGGTIGYLPPESFRKKTVATAKTDVFSFGV 334


>At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -3

Query: 483 EGHRALRTRLHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVCRCRSSFLIIHL 304
           E  R+  + + +GE R    EDSHE +P +     +  + ++   +++  C     + + 
Sbjct: 90  ESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTCNCHSFVANN 149

Query: 303 LN 298
           LN
Sbjct: 150 LN 151


>At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -3

Query: 483 EGHRALRTRLHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVCRCRSSFLIIHL 304
           E  R+  + + +GE R    EDSHE +P +     +  + ++   +++  C     + + 
Sbjct: 90  ESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTCNCHSFVANN 149

Query: 303 LN 298
           LN
Sbjct: 150 LN 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,328
Number of Sequences: 28952
Number of extensions: 304964
Number of successful extensions: 669
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)