Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p06f
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi...    38   0.007
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil...    38   0.007
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi...    37   0.009
At1g51720.1 68414.m05828 glutamate dehydrogenase, putative simil...    31   0.79 
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    29   1.8  
At5g37110.1 68418.m04454 hypothetical protein                          29   2.4  
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro...    27   7.4  
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,...    27   7.4  
At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138...    27   7.4  
At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR...    27   9.7  
At5g40470.1 68418.m04908 expressed protein                             27   9.7  
At4g10090.1 68417.m01651 expressed protein                             27   9.7  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   9.7  
At2g05080.1 68415.m00530 hypothetical protein low similarity to ...    27   9.7  
At2g04460.1 68415.m00450 expressed protein                             27   9.7  

>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
           ++++  + +D G     +G+R QH   R P KGGIR+  +V
Sbjct: 35  IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEV 75


>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
           ++++  + +D G     +G+R QH   R P KGGIR+  +V
Sbjct: 35  IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEV 75


>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
           to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
           thaliana] SWISS-PROT:Q38946
          Length = 411

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
           ++++  + +D G     +G+R QH   R P KGGIR+  +V
Sbjct: 35  IKVECTIPKDDGTLVSYIGFRVQHDNARGPMKGGIRYHPEV 75


>At1g51720.1 68414.m05828 glutamate dehydrogenase, putative similar
           to NADP-specific glutatamate dehydrogenase (NADP-GDH)
           SP:P28724 [Giardia lamblia (Giardia intestinalis)]
          Length = 637

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 455 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRF 592
           +L+EP + ++  + P   D G+  +  G+R Q +    P +GGIRF
Sbjct: 238 RLLEP-ERMIVFRVPWIDDRGETHVNRGFRVQFNQALGPCRGGIRF 282


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 359 HRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMILG 538
           HR+  VV++ +  ++K    + +  K +  I  + E     + +    RR++ DYE  LG
Sbjct: 422 HRSYAVVDEMVTREVKKDPAVRQVYKLLTSIHSIFEQISEKILMTDRFRRETVDYEKKLG 481


>At5g37110.1 68418.m04454 hypothetical protein
          Length = 1307

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +2

Query: 278 SHEIPDKLKDIPTSANPKFFHMV-EYFFHRACQVVEDK--LVEDLKSRTPIEEKKKKVAG 448
           S EIPDKLKD      P+ F ++ E   H  C VV  K   +E+ K RT    +KK    
Sbjct: 532 SAEIPDKLKD------PELFEVIKESMVHGPCGVVNPKCPCMENGKRRTDDFVEKKDFKC 585

Query: 449 ILKLMEPCDHILEIQF 496
             + + P +  L +++
Sbjct: 586 DNRYVIPYNRSLSLRY 601


>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
           protein
          Length = 210

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 145 HHAASQEYRQVSGSAAQEFCSK*SPQ--YNVPNHTSW 249
           H+    +  QVSG+   EFC   SP+  YN  +  SW
Sbjct: 38  HNHNLNDVTQVSGALEYEFCDSSSPKAVYNPGHDISW 74


>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
           putative contains Pfam profiles PF00005: ABC
           transporter, PF00664: ABC transporter transmembrane
           region
          Length = 1488

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 203 VQNEAL-NTMFRIIPAGVNVCCRTYAS 280
           + NE+L N  +  +P GVN+C   YAS
Sbjct: 207 LNNESLDNVEYDALPGGVNICPERYAS 233


>At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.; expression supported by MPSS
          Length = 590

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 430 EKESSRYSKTYGTMRSHS*DSISSEARFWRLRNDIRLSRTTFHTQD 567
           EK+  +Y+ TYG M S + D+++   R  R  N     +    T+D
Sbjct: 118 EKQKMKYNGTYGRMLSLATDALAEGMRDNRYCNGFDFEQNKLETKD 163


>At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
           Non-consensus TT donor splice site at exon 1
          Length = 1104

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 271 CAAADIHSSWYDSEHCIEGFILNRILERRN---H*LGDILEMQH 149
           C    I  + YDS+ C++  +L++IL +++   H LG I E  H
Sbjct: 238 CFMGTIDVNDYDSKLCLQNKLLSKILNQKDMKIHHLGAIEEWLH 281


>At5g40470.1 68418.m04908 expressed protein
          Length = 496

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = -3

Query: 343 HVEELRIRTCRNIFELIWNLMTSVC 269
           ++EE+ +RTCR+I +++   ++ +C
Sbjct: 250 NLEEIELRTCRSIVDVVLLKVSEIC 274


>At4g10090.1 68417.m01651 expressed protein
          Length = 262

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 195 LSGGTTDLAIFLRCSM-VAYYVKYDNRVRNRVALHLLNF*NKLIIFVSFMLDCSD 34
           LS  ++D  IFL  +   ++Y +   ++   +A H  N  N+L+ F   M+ CSD
Sbjct: 51  LSSNSSDALIFLAFARPFSHYDRILRKLGCNLATHKSN--NRLVFFDMLMVKCSD 103


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 605 LRPLRIEYLLWLESCVWNVVRDSLISFRNRQNRASEEIESQECDRM 468
           LRPL  + +L  E+  W  + D+ + +RN     S    +   DR+
Sbjct: 31  LRPLNEKEILANEAADWECINDTTVLYRNTLREGSTFPSAYSFDRV 76


>At2g05080.1 68415.m00530 hypothetical protein low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 1238

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 278 SHEIPDKLKDIPTSANPKFFHMV-EYFFHRACQVVEDK 388
           S EIPDKLKD      P+ F ++ E   H  C VV  K
Sbjct: 399 SAEIPDKLKD------PELFEVIKEMMVHGPCGVVNPK 430


>At2g04460.1 68415.m00450 expressed protein 
          Length = 148

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 280 TSVCAAADIHSSWYDSEHCIEGFILNRILERR 185
           T+V A   +++ W   ++C +G ILNR++  R
Sbjct: 69  TNVYAVGSMNT-WAQGDYCCKGLILNRLVHDR 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,035
Number of Sequences: 28952
Number of extensions: 280232
Number of successful extensions: 665
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)