Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p03r
         (709 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     25   3.1  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   4.1  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   5.4  

>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 433 KQRTTTGNKRCSIR*SYSHRRIWCQQKRLGHCY 335
           K R+ T   RC +R +  H+R W +      CY
Sbjct: 446 KNRSLTEMGRCMLRDAGMHKRFWAEAVNTA-CY 477


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 576  LKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARI 466
            L+ +KL + K H    ++   +  +  R  EGK+ R+
Sbjct: 972  LEEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRL 1008


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = -2

Query: 690  LRSGNYNVIVVDWSS-FSLSTYSTAVMAVTG--VGSSIATFLKNLKLPLNKVHIVGFNLG 520
            L +GN  V ++D    F++    + V A  G  +G+S A    N      K  IVG  +G
Sbjct: 2670 LYAGNSPVSLIDPDGQFAILLIVSIVTAAVGAYLGASAANKSWNPAKWEVKKAIVGATMG 2729

Query: 519  AHVAGVTGRNLEGKVARITG 460
            A V G     + G +  + G
Sbjct: 2730 AIVGGFAPVGIAGSITFLAG 2749


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,390
Number of Sequences: 2352
Number of extensions: 14918
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)