Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p03f
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 297 LRSGNYNVIVVDWSSF 344
           +++G+Y V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 297 LRSGNYNVIVVDWSSF 344
           +++G+Y V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 222 DIVVIIHGHSGTATTTINPIVK 287
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 222 DIVVIIHGHSGTATTTINPIVK 287
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 275 VDRRRSSATVTVYYYDNIP 219
           VD+ R    VT+  YD +P
Sbjct: 70  VDQWRDKTFVTILRYDGVP 88


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 347 SINIFNGSDGCD 382
           S+N +  SDGCD
Sbjct: 160 SLNGYGSSDGCD 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,507
Number of Sequences: 438
Number of extensions: 4028
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)