Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p03f
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    33   0.11 
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.25 
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.25 
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    30   1.3  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    30   1.3  
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein...    29   2.4  
At4g21326.1 68417.m03081 subtilase family protein contains simil...    28   4.1  
At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding protei...    27   9.5  
At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing...    27   9.5  

>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVARITG 527
            + GK+ +  G
Sbjct: 454 TISGKIGKEVG 464


>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVAR 518
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVAR 518
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 233 NNTRSQWHCYDDDQPYC*RRVFKKWQ---L*RYRC 328
           NNTRS+  C+  D+  C  +V  KWQ      YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 NNTRSQWHCYDDDQPYC*RRVFKKWQ 310
           NNTRS+  C+  D+  C  +V  KWQ
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647


>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to unknown protein (emb|CAB88055.1)
          Length = 212

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 90  QNLERFGSLNKYYYYSNAQRNPITLTEDH---FPTG--NDPAAPFNNNWDIVVIIH 242
           ++L  +GS   +Y+Y    +N +T T+ +    PTG   D   P  N  ++V I H
Sbjct: 53  RDLPGYGSEEHWYFYCKKPKNQVTRTKSYNLWIPTGEKTDVLDPKKNGGELVGIKH 108


>At4g21326.1 68417.m03081 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 690

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/86 (27%), Positives = 34/86 (39%)
 Frame = +3

Query: 249 SGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKL 428
           S  ATTTIN        RSG+Y   +V    F    Y      +  + SS +     +K+
Sbjct: 357 SALATTTINKAAGLIVARSGDYQSDIVYNQPFIYVDYEVGAKILRYIRSSSS---PTIKI 413

Query: 429 PLNKVHIVGFNLGAHVAGVTGRNLEG 506
              K  +VG  +   V G + R   G
Sbjct: 414 STGKT-LVGRPIATQVCGFSSRGPNG 438


>At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding
           protein-related contains weak similarity to CND41,
           chloroplast nucleoid DNA binding protein (GI:2541876)
           [Nicotiana tabacum]
          Length = 452

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVT 488
           A +A     S IA   + +KLP+      GF+L  +V+GVT
Sbjct: 332 AFLAEPAYRSVIAAVRRRVKLPIADALTPGFDLCVNVSGVT 372


>At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing
           enzyme C-terminal domain-containing protein / hydrolase,
           alpha/beta fold family protein contains Pfam profiles
           PF01188: Mandelate racemase / muconate lactonizing
           enzyme, C-terminal domain, PF00561: hydrolase,
           alpha/beta fold family
          Length = 656

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
 Frame = +3

Query: 210 NNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTY----STAVMA 377
           N    + + +HG  GT    I PI+      SG+   I VD      S      S    +
Sbjct: 377 NAEGSVALFLHGFLGTGEEWI-PIMTGI---SGSARCISVDIPGHGRSRVQSHASETQTS 432

Query: 378 VTGVGSSIATFLKNL--KLPLNKVHIVGFNLGAHVAGVTGRNLEGKV--ARITGLDPSAR 545
            T     IA  L  L  ++   KV IVG+++GA +A         K+  A +    P  +
Sbjct: 433 PTFSMEMIAEALYKLIEQITPGKVTIVGYSMGARIALYMALRFSNKIEGAVVVSGSPGLK 492

Query: 546 DWENNVLRLGTNDAQ 590
           D     +R  T+D++
Sbjct: 493 DPVARKIRSATDDSK 507


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,414
Number of Sequences: 28952
Number of extensions: 270695
Number of successful extensions: 653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)