Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11p01r
         (709 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RF78 Cluster: Neurofilament protein H form H2; n=3; P...    36   0.74 
UniRef50_Q4TB06 Cluster: Chromosome 14 SCAF7218, whole genome sh...    35   2.3  
UniRef50_Q8WZX5 Cluster: 5'-3' exoribonuclease 2; n=11; Pezizomy...    35   2.3  
UniRef50_A7ECI2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q3M5E6 Cluster: Multicopper oxidase, types 2 and 3 prec...    33   6.9  
UniRef50_A1W3P6 Cluster: Protein kinase precursor; n=2; Acidovor...    33   6.9  

>UniRef50_Q7RF78 Cluster: Neurofilament protein H form H2; n=3;
           Plasmodium (Vinckeia)|Rep: Neurofilament protein H form
           H2 - Plasmodium yoelii yoelii
          Length = 811

 Score = 36.3 bits (80), Expect = 0.74
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = -1

Query: 574 SMLQLRTPIXXVAPXNIVXXPVEKTXEEIENDSEVGSISWVEYPAE--LDEDGNGLVXVD 401
           S +++  P+   +P  +     +++  E+E   E  S   VE P E  +  +    + V+
Sbjct: 625 SPVEVEAPVEAESPVEVEAPVEDESPVEVEAPVEDESPVEVEAPVEDEIPVEVEAPIEVE 684

Query: 400 LPIEAQ-PEDLEKAQLVDLXVENVAEPEDLSPVQVVXPIVENSQSEXP 260
            P+EA+ P ++E     +  VE  +  E  SPV+   P+   S  E P
Sbjct: 685 APVEAEAPVEVESPVEAESPVEAESPVEAESPVEAESPVEAESPVEAP 732


>UniRef50_Q4TB06 Cluster: Chromosome 14 SCAF7218, whole genome shotgun
            sequence; n=1; Tetraodon nigroviridis|Rep: Chromosome 14
            SCAF7218, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 878

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = -1

Query: 553  PIXXVA-PXNIVXXPVEKTXEEIENDSEVGSISWVEYPAELDEDGNGLVXVDLPIEAQPE 377
            P+  V+ P   +  PVE+  E IE DSE      VE    +DED   +  +  P+E   E
Sbjct: 774  PVEEVSEPIEELLEPVEEVSEPIEEDSEP-----VELLEPVDEDSEPVEELLEPVEEASE 828

Query: 376  DLEKAQLVDLXVENVAEPEDLSPVQVVXPIVENS 275
             +E  + V+  +E V E  +  PV+ +   VE +
Sbjct: 829  PVELLEPVEELLEPVEEASE--PVEELLEPVEEA 860


>UniRef50_Q8WZX5 Cluster: 5'-3' exoribonuclease 2; n=11;
           Pezizomycotina|Rep: 5'-3' exoribonuclease 2 - Neurospora
           crassa
          Length = 1072

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -1

Query: 391 EAQPEDLEKAQLVDLXVENVAEPEDLSPVQVVXPIVENSQSEXPGKRYPDATWR*IIYFS 212
           EA  ++ +K + V+L  +   +P++  PV+VV     +S S  PG  + D     + Y+ 
Sbjct: 125 EAMEKEEDKQKFVELLKKQNGKPQEEEPVEVVVKKAFDSNSITPGTPFMDILAASLRYWC 184

Query: 211 SFYLN 197
           S+ LN
Sbjct: 185 SYKLN 189


>UniRef50_A7ECI2 Cluster: Putative uncharacterized protein; n=1;
            Sclerotinia sclerotiorum 1980|Rep: Putative
            uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 3301

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = -1

Query: 514  PVEKTXEEIENDS----EVGSISWVEYPAELDEDGNGLVXVDLPIEAQPEDLEKAQLVD 350
            PVE++  E  ND     EV S+ + E P  L   G+ LV V+LP E +P+D + A+L D
Sbjct: 2514 PVEESTSEAMNDENSPLEVESV-FGEEPHVL---GSELVAVELPTETEPKDPQSAELGD 2568


>UniRef50_Q3M5E6 Cluster: Multicopper oxidase, types 2 and 3
           precursor; n=1; Anabaena variabilis ATCC 29413|Rep:
           Multicopper oxidase, types 2 and 3 precursor - Anabaena
           variabilis (strain ATCC 29413 / PCC 7937)
          Length = 556

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
 Frame = -1

Query: 493 EIENDSEVGSISWVEYPAE-LDEDGNGLVXVDLPIEAQPEDLEKAQLVDLXV---ENVAE 326
           E+ NDSE+ ++   E PA+ L E+ +G   +   +   PE+ ++   V+  +   E   E
Sbjct: 388 ELPNDSELAAVKMKEAPADILAEEISGSQKIVFGLTCIPENCQQTTKVNFEINGKEFNGE 447

Query: 325 PEDLSPVQVVXPIVENSQSEXP 260
           P +L+  +V   I+E  +S  P
Sbjct: 448 PRNLTLTKVEEWILETGKSVVP 469


>UniRef50_A1W3P6 Cluster: Protein kinase precursor; n=2;
           Acidovorax|Rep: Protein kinase precursor - Acidovorax
           sp. (strain JS42)
          Length = 660

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = -1

Query: 478 SEVGSISWVEYPAELDEDGNGLVXVDLPIEAQPEDLEKAQLVDLXVENVAEPEDLSPVQV 299
           +E+GSI WVE P+  D  G  +  +DL   +QP+D  + Q   +   + + P DL  V  
Sbjct: 357 AELGSI-WVE-PSSKDAQGVAVPMIDLTAMSQPQD-SRPQAATVVAASASAPADLM-VST 412

Query: 298 VXP 290
           V P
Sbjct: 413 VEP 415


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,813,687
Number of Sequences: 1657284
Number of extensions: 7170815
Number of successful extensions: 17860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17810
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)